RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TMEM156Q8N614 296 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 BCORP1Q8N888 145 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 OR6T1Q8NGN1 323 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 SLC7A13Q8TCU3 470 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 BORCS5Q969J3 196 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 POLR2J3Q9H1A7 115 aaKnown RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 ZBTB20Q9HC78 741 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 KLHL28Q9NXS3 571 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 MRTO4Q9UKD2 239 aaKnown RBP12.29□□□□□ -0.44
LIMS1-204ENST00000409441 IFT52Q9Y366 437 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 CFAP47Q6ZTR5 3102 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 LAMA5O15230 3695 aa12.29□□□□□ -0.44
LIMS1-204ENST00000409441 INHBBP09529 407 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 NAGAP17050 411 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 GSTM3P21266 225 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 IFNGR2P38484 337 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 SOX3P41225 446 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 RFX3P48380 749 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ENTPD1P49961 510 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 CHRNEQ04844 493 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 MFAP5Q13361 173 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 PIN1Q13526 163 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-204ENST00000409441 IRF3Q14653 427 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 SPCS2Q15005 226 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 DECR1Q16698 335 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ST3GAL2Q16842 350 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF829Q3KNS6 432 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ARHGAP11BQ3KRB8 267 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 CCNJQ5T5M9 372 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF468Q5VIY5 522 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-204ENST00000409441 PODNL1Q6PEZ8 512 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 FIGNL1Q6PIW4 674 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 LYPD8Q6UX82 237 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 COMTD1Q86VU5 262 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 SLC34A3Q8N130 599 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ASB15Q8WXK1 588 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 SLC38A4Q969I6 547 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 OMA1Q96E52 524 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ADOQ96SZ5 270 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 SMAD5Q99717 465 aaKnown RBP12.28□□□□□ -0.44
LIMS1-204ENST00000409441 CACYBPQ9HB71 228 aaKnown RBP12.28□□□□□ -0.44
LIMS1-204ENST00000409441 FBXO34Q9NWN3 711 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ANKRD10Q9NXR5 420 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 PLA2G3Q9NZ20 509 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 ABI3Q9P2A4 366 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 PCDHGA9Q9Y5G4 932 aaKnown RBP12.28□□□□□ -0.44
LIMS1-204ENST00000409441 DOCK10Q96BY6 2186 aa12.28□□□□□ -0.44
LIMS1-204ENST00000409441 MKRN2OSH3BPM6 223 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 IL33O95760 270 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 WDPCPO95876 746 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 F10P00742 488 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 IGKV1D-16P01601 117 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 FBXO45P0C2W1 286 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 CD96P40200 585 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 CYB561P49447 251 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 PLCXD2Q0VAA5 305 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 TRAM2Q15035 370 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 COL28A1Q2UY09 1125 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 ZNF791Q3KP31 576 aaPredicted RBP12.27□□□□□ -0.44
LIMS1-204ENST00000409441 LINC00303Q3SY05 128 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 DCST2Q5T1A1 773 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 MEDAGQ5VYS4 303 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 C1orf94Q6P1W5 598 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 IL20RBQ6UXL0 311 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 OR5M3Q8NGP4 307 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 DIO2Q92813 273 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 EFHD2Q96C19 240 aaPredicted RBP12.27□□□□□ -0.44
LIMS1-204ENST00000409441 SDF2Q99470 211 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 WFDC6Q9BQY6 131 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 UTP23Q9BRU9 249 aaKnown RBP12.27□□□□□ -0.44
LIMS1-204ENST00000409441 CDCA4Q9BXL8 241 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 MTHFD2LQ9H903 347 aaPredicted RBP12.27□□□□□ -0.44
LIMS1-204ENST00000409441 PALMDQ9NP74 551 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 MAN2C1Q9NTJ4 1040 aa12.27□□□□□ -0.44
LIMS1-204ENST00000409441 RYDENQ9NUL5 291 aaKnown RBP12.27□□□□□ -0.44
LIMS1-204ENST00000409441 CDK2AP1O14519 115 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TSPAN2O60636 221 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 FCMRO60667 390 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 PPM1BO75688 479 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 AK1P00568 194 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 LCKP06239 509 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 CD36P16671 472 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 POU1F1P28069 291 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 IL12BP29460 328 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TGFBR2P37173 567 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SLC15A1P46059 708 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 SERPINB10P48595 397 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 PNLIPRP2P54317 469 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 PSMD4P55036 377 aaKnown RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 FBXW4P57775 412 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TAS2R41P59536 307 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OC90Q02509 493 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ENTPD8Q5MY95 495 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TMEM236Q5W0B7 351 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 DESI1Q6ICB0 168 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 TUBA3EQ6PEY2 450 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 IGFL2Q6UWQ7 119 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 CASP12Q6UXS9 341 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 OLIG3Q7RTU3 272 aa12.26□□□□□ -0.45
LIMS1-204ENST00000409441 ZNF367Q7RTV3 350 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms