RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DEFA6Q01524 100 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 EMX1Q04741 257 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 LTBQ06643 244 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 Q499Y3 187 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 SLC46A3Q7Z3Q1 461 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 FAM71E2Q8N5Q1 922 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 COMMD1Q8N668 190 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ANKLE1Q8NAG6 615 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 OR51Q1Q8NH59 317 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 PHOSPHO2Q8TCD6 241 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 IGSF8Q969P0 613 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 SORT1Q99523 831 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 C16orf70Q9BSU1 422 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GAREM1Q9H706 876 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 C1GALT1Q9NS00 363 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 RAB22AQ9UL26 194 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF443Q9Y2A4 671 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 TSPAN11A1L157 253 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 TRAPPC2LH3BP13 241 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GPR171O14626 319 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 PIP5K1CO60331 668 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF254O75437 659 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 B3GALNT1O75752 331 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 OR2F2O95006 317 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GPR75O95800 540 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ALPLP05186 524 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GIPP09681 153 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 SELEP16581 610 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 JUNDP17535 347 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 HTR1FP30939 366 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 CCR7P32248 378 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF136P52737 540 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 CXADRP78310 365 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 FLI1Q01543 452 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 OR2F1Q13607 317 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GPR18Q14330 331 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 AARDQ4LEZ3 155 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 EMC4Q5J8M3 183 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM201Q5SNT2 666 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 HES5Q5TA89 166 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 PODNL1Q6PEZ8 512 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM64Q6YI46 380 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 DPY19L2P2Q6ZN68 376 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF679Q8IYX0 411 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 NAGSQ8N159 534 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 OR51A2Q8NGJ7 313 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 CHTF18Q8WVB6 975 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 GABARAPL1Q9H0R8 117 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 KCNK13Q9HB14 408 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 OBP2AQ9NY56 170 aa5.72□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM184BQ9Y519 407 aaPredicted RBP5.72□□□□□ -1.49
SCN1A-203ENST00000409050 A0A0D9SEW6 157 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM129A0AVI4 362 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 IGLON5A6NGN9 336 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 MROH6A6NGR9 719 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 AIPO00170 330 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 ADAM12O43184 909 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 ZFAND5O76080 213 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 MT-ND4LP03901 98 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A6P0DMU7 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A5P0DMU8 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A7P0DMV0 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A8P0DMV1 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A9P0DMV2 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 BCKDHBP21953 392 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CCR9P51686 369 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 SLC35A1P78382 337 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 RBPJQ06330 500 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF791Q3KP31 576 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A2Q5DJT8 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A1Q5HYN5 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 ELP2Q6IA86 826 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 MBOAT2Q6ZWT7 520 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 OR2L13Q8N349 312 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 SLC22A24Q8N4F4 322 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 PARP16Q8N5Y8 322 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 ESX1Q8N693 406 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 CT45A3Q8NHU0 189 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 DTD2Q96FN9 168 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 RNF39Q9H2S5 420 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 STEAP1Q9UHE8 339 aa5.71□□□□□ -1.49
SCN1A-203ENST00000409050 LSM5Q9Y4Y9 91 aaKnown RBP5.71□□□□□ -1.49
SCN1A-203ENST00000409050 MN1Q10571 1320 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-203ENST00000409050 SSX5O60225 188 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CACNG3O60359 315 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CNOT4O95628 575 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 PLATP00750 562 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SERPINF1P36955 418 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 FOLR3P41439 243 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 RAB4BP61018 213 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 GRB2P62993 217 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 HHEXQ03014 270 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ACSM1Q08AH1 577 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SLC10A2Q12908 348 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 OPCMLQ14982 345 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF74Q16587 644 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 PKDCCQ504Y2 493 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 C4orf17Q53FE4 359 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 PDLIM3Q53GG5 364 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 DPY19L4Q7Z388 723 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms