RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.93□□□□□ -0.34
SKA1-202ENST00000398452 ZNF766Q5HY98 468 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 OGFRL1Q5TC84 451 aaPredicted RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 TIGD3Q6B0B8 471 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 PCSK4Q6UW60 755 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 GRINAQ7Z429 371 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 TSEN54Q7Z6J9 526 aaKnown RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 GALNT4Q8N4A0 578 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 CBR4Q8N4T8 237 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 OR2M3Q8NG83 312 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 MAGEE2Q8TD90 523 aaPredicted RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 GPR119Q8TDV5 335 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 ACOT11Q8WXI4 607 aaPredicted RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 RSPO3Q9BXY4 272 aaPredicted RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 RTN4RQ9BZR6 473 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 COQ10BQ9H8M1 238 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 C12orf10Q9HB07 376 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 NTN4Q9HB63 628 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 KLHL1Q9NR64 748 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 VDAC3Q9Y277 283 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 NTNG1Q9Y2I2 539 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 MED31Q9Y3C7 131 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 PCDHGB6Q9Y5F9 930 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 PCDHGA9Q9Y5G4 932 aaKnown RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 SMG1Q96Q15 3661 aaKnown RBP12.93□□□□□ -0.34
SKA1-202ENST00000398452 PCSK5Q92824 1860 aa12.93□□□□□ -0.34
SKA1-202ENST00000398452 NEURL1O76050 574 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 DPP4P27487 766 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 TACR3P29371 465 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 RBM34P42696 430 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 POLR2HP52434 150 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 RAD23AP54725 363 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 DSCR4P56555 118 aaPredicted RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 GPR85P60893 370 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 ALDH6A1Q02252 535 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 MERTKQ12866 999 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 DAG1Q14118 895 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 RFX4Q33E94 735 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 PODNL1Q6PEZ8 512 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 POMZP3Q6PJE2 187 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 RNF113BQ8IZP6 322 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 ZNF843Q8N446 348 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 OR4K5Q8NGD3 323 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 TMEM239Q8WW34 195 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 DNAJC9Q8WXX5 260 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 ZBTB8AQ96BR9 441 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 DHRS1Q96LJ7 313 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 FRMD6Q96NE9 622 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 SIGLEC12Q96PQ1 595 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 SMAD5Q99717 465 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 TACO1Q9BSH4 297 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 ZFP64Q9NPA5 681 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 MGAT4BQ9UQ53 548 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 TMEM5Q9Y2B1 443 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 GCN1Q92616 2671 aaKnown RBP12.92□□□□□ -0.34
SKA1-202ENST00000398452 NINQ8N4C6 2090 aa12.92□□□□□ -0.34
SKA1-202ENST00000398452 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 TRBV4-1A0A0J9YWV2 114 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 SH3PXD2BA1X283 911 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 ARRDC5A6NEK1 342 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 PDLIM1O00151 329 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 LCE2BO14633 110 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 EI24O14681 340 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 NME2P1O60361 137 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 TRAPPC6AO75865 159 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 RASAL1O95294 804 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 HPRP00739 348 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 HK1P19367 917 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 NME2P22392 152 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 APOBEC1P41238 236 aaKnown RBP12.91□□□□□ -0.34
SKA1-202ENST00000398452 HSPA13P48723 471 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 ALDH3A2P51648 485 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 PLAURQ03405 335 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 PPP4R4Q6NUP7 873 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 IGFL2Q6UWQ7 119 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 GALNTL5Q7Z4T8 443 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 NKAIN4Q8IVV8 208 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 SULF2Q8IWU5 870 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 FADS6Q8N9I5 356 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 WDSUB1Q8N9V3 476 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 MDS2Q8NDY4 140 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 OR2M7Q8NG81 312 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 OR4C15Q8NGM1 316 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 SLC7A13Q8TCU3 470 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 C3orf49Q96BT1 292 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 C1GALT1C1Q96EU7 318 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 MRGPRX4Q96LA9 322 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 GABARAPL1Q9H0R8 117 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 KRT84Q9NSB2 600 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 MED17Q9NVC6 651 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 VNN3Q9NY84 501 aa12.91□□□□□ -0.34
SKA1-202ENST00000398452 PIEZO2Q9H5I5 2752 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 HELZ2Q9BYK8 2649 aaKnown RBP12.9□□□□□ -0.34
SKA1-202ENST00000398452 A0A087WUJ7 227 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 HTR3EA5X5Y0 456 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 PYCARD-AS1I3L0S3 204 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 ERVH48-1M5A8F1 160 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 ADAM11O75078 769 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 SEMA7AO75326 666 aa12.9□□□□□ -0.34
SKA1-202ENST00000398452 TRIM3O75382 744 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms