RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FAM83FQ8NEG4 500 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 OR1J4Q8NGS1 313 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 CNOT9Q92600 299 aaKnown RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 MYDGFQ969H8 173 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 ZC3H10Q96K80 434 aaKnown RBP9.51□□□□□ -0.89
COL6A3-205ENST00000392004 DUSP21Q9H596 190 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 MAGIXQ9H6Y5 334 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 UBQLN4Q9NRR5 601 aa9.51□□□□□ -0.89
COL6A3-205ENST00000392004 NLRC5Q86WI3 1866 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FAM25AB3EWG3 89 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FAM25CB3EWG5 89 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FAM25GB3EWG6 89 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 LOC110117498-PIK3R3F6TDL0 507 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 M0R129 80 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 CDX4O14627 284 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 RGS13O14921 159 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 KCNK2O95069 426 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 MRPL19P49406 292 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 TOR1AIP2Q8NFQ8 470 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 OR7G1Q8NGA0 311 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 OR9Q2Q8NGE9 314 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 NSMAFQ92636 917 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 MOAP1Q96BY2 351 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ZG16BQ96DA0 208 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FAM46AQ96IP4 442 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 RADILQ96JH8 1075 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 DMRTB1Q96MA1 342 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF578Q96N58 590 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 COPS4Q9BT78 406 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 RNF121Q9H920 327 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FBXO34Q9NWN3 711 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 TAS2R10Q9NYW0 307 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 DNAJC27Q9NZQ0 273 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ADAM29Q9UKF5 820 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SLC7A7Q9UM01 511 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 COL4A3Q01955 1670 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ANAPC1Q9H1A4 1944 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ARHGEF9O43307 516 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FOXS1O43638 330 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 MRPS14O60783 128 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SLC6A9P48067 706 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SLC14A1Q13336 389 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 TRA2AQ13595 282 aaKnown RBP eCLIP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 TIGD6Q17RP2 521 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 PRAMEF8Q5VWM4 474 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 PRAMEF7Q5VXH5 474 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 IQCF2Q8IXL9 164 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 C19orf43Q9BQ61 176 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 DPH1Q9BZG8 443 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 OSGIN1Q9UJX0 560 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF407Q9C0G0 2248 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 EEF1E1-BLOC1S5C9J1V9 151 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SULT2B1O00204 365 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 EEF1E1O43324 174 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 DBIP07108 87 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 MRPL3P09001 348 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 POU3F2P20265 443 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 STAT5AP42229 794 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 STARP49675 285 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 CSNK2BP67870 215 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 TCF15Q12870 199 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SGCAQ16586 387 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 FXNQ16595 210 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 RUNDC3AQ59EK9 446 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 OGFOD3Q6PK18 319 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF550Q7Z398 422 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF100Q8IYN0 542 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SLC34A3Q8N130 599 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 BBS10Q8TAM1 723 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SUN5Q8TC36 379 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 SLC35A4Q96G79 324 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 C10orf90Q96M02 699 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ZNF768Q9H5H4 540 aaKnown RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 LYRM4Q9HD34 91 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ACSS1Q9NUB1 689 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-205ENST00000392004 MMACHCQ9Y4U1 282 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 ASB4Q9Y574 426 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 PCDHGA3Q9Y5H0 932 aa9.5□□□□□ -0.89
COL6A3-205ENST00000392004 LINC00854A0A1B0GVQ3 168 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 METTL15A6NJ78 407 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 RIIAD1A6NNX1 92 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 RGS5O15539 181 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SPNP16150 400 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 MYL12AP19105 171 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SOX3P41225 446 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 KEAP1Q14145 624 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 ARMCX4Q5H9R4 360 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 OTPQ5XKR4 325 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 SHQ1Q6PI26 577 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 IQCF1Q8N6M8 205 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 OR10H4Q8NGA5 316 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TESCQ96BS2 214 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 DCAF13Q9NV06 445 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 UPB1Q9UBR1 384 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 USF3Q68DE3 2245 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TLX2O43763 284 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 RPP14O95059 124 aaKnown RBP9.49□□□□□ -0.89
COL6A3-205ENST00000392004 TGFBR1P36897 503 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 GSTM5P46439 218 aa9.49□□□□□ -0.89
COL6A3-205ENST00000392004 RPS5P46782 204 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms