RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C9orf62Q8N4C0 152 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 ASB16Q96NS5 453 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 DERL3Q96Q80 235 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 PITHD1Q9GZP4 211 aaPredicted RBP11.23□□□□□ -0.61
CLIP3-201ENST00000360535 FOLH1BQ9HBA9 442 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 ADAM18Q9Y3Q7 739 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 B3GALT2O43825 422 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 SOX30O94993 753 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 RCBTB2O95199 551 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ADRB1P08588 477 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 THBS2P35442 1172 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 SNTB2Q13425 540 aaKnown RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 PLA1AQ53H76 456 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 TIGD3Q6B0B8 471 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 FAAH2Q6GMR7 532 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 YAF2Q8IY57 180 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 THAP4Q8WY91 577 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 MEPEQ9NQ76 525 aaPredicted RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 MED17Q9NVC6 651 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF346Q9UL40 294 aaKnown RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 SPATA2Q9UM82 520 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 CARNS1A5YM72 827 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ACOD1A6NK06 481 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 KLF4O43474 513 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 FGF17O60258 216 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 HRGP04196 525 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ANKRD34CP0C6C1 535 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF3P17036 446 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 EDNRAP25101 427 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 IGFALSP35858 605 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF85Q03923 595 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 HYAL4Q2M3T9 481 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 DEFB110Q30KQ9 67 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 WDR45BQ5MNZ6 344 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 FBXO42Q6P3S6 717 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 CCDC28AQ8IWP9 274 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF687Q8N1G0 1237 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 UXS1Q8NBZ7 420 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 TMEM52Q8NDY8 209 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 OR4N2Q8NGD1 307 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 GIMAP1Q8WWP7 306 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 BADQ92934 168 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 KISS1RQ969F8 398 aaPredicted RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 OR10A4Q9H209 315 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 TMEM27Q9HBJ8 222 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 OR6C2Q9NZP2 312 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 PPIEQ9UNP9 301 aaKnown RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 TRBV2A0A0J9YWF9 115 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 SLC22A31A6NKX4 558 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 RNGTTO60942 597 aaKnown RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 HNRNPA1P09651 372 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 NPR2P20594 1047 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 NDUFS1P28331 727 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 BTCP35070 178 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 TNFRSF17Q02223 184 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 AMZ1Q400G9 498 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 OTPQ5XKR4 325 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF619Q8N2I2 560 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 C10orf90Q96M02 699 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 APOOQ9BUR5 198 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 RAB11FIP5Q9BXF6 653 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 EVA1BQ9NVM1 165 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 THAP10Q9P2Z0 257 aaPredicted RBP11.22□□□□□ -0.61
CLIP3-201ENST00000360535 COLEC10Q9Y6Z7 277 aa11.22□□□□□ -0.61
CLIP3-201ENST00000360535 OR6C74A6NCV1 312 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 WNT1P04628 370 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 CT62P0C5K7 136 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 H2AFB2P0C5Z0 115 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 ANXA3P12429 323 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 CFL1P23528 166 aaKnown RBP11.21□□□□□ -0.61
CLIP3-201ENST00000360535 EEF1A1P68104 462 aaKnown RBP11.21□□□□□ -0.61
CLIP3-201ENST00000360535 RUNX3Q13761 415 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 EIPR1Q53HC9 387 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF542PQ5EBM4 170 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 PYHIN1Q6K0P9 492 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 CREB3L2Q70SY1 520 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 GATSQ8NAP1 163 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 CEP76Q8TAP6 659 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 ARPC5LQ9BPX5 153 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 ERVMER34-1Q9H9K5 563 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 ADGRL4Q9HBW9 690 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 CD93Q9NPY3 652 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 LYARQ9NX58 379 aaKnown RBP11.21□□□□□ -0.61
CLIP3-201ENST00000360535 SIGLEC7Q9Y286 467 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 IER3IP1Q9Y5U9 82 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 HEATR5AQ86XA9 2040 aa11.21□□□□□ -0.61
CLIP3-201ENST00000360535 A0A087WV48 116 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 RBMS1P29558 406 aaKnown RBP11.21□□□□□ -0.62
CLIP3-201ENST00000360535 GDI2P50395 445 aaKnown RBP11.21□□□□□ -0.62
CLIP3-201ENST00000360535 ST3GAL2Q16842 350 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 ARHGAP11BQ3KRB8 267 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF767PQ75MW2 155 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 C10orf53Q8N6V4 93 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF527Q8NB42 609 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 LGALS14Q8TCE9 139 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 GAL3ST3Q96A11 431 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 ZNF764Q96H86 408 aaPredicted RBP11.21□□□□□ -0.62
CLIP3-201ENST00000360535 TMEM168Q9H0V1 697 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 ANKRD19PQ9H560 264 aa11.21□□□□□ -0.62
CLIP3-201ENST00000360535 CMC2Q9NRP2 79 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms