RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GNB5O14775 395 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 GABRA4P48169 554 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 MTNR1BP49286 362 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 PGDP52209 483 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF85Q03923 595 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 ZSWIM7Q19AV6 140 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 NDUFAF6Q330K2 333 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 MZT2AQ6P582 158 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 METAP1DQ6UB28 335 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC43A2Q8N370 569 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 OR5M3Q8NGP4 307 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 OR4C3Q8NH37 302 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 SMPDL3BQ92485 455 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 ZNF285Q96NJ3 590 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 MMP28Q9H239 520 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 PPIL3Q9H2H8 161 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 MARCH7Q9H992 704 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 ERVK-19Q9WJR5 959 aa19.16■□□□□ 0.66
CCDC88B-203ENST00000359902 PLPP2O43688 288 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 CSF2P04141 144 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 CHRNB1P11230 501 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 E2F1Q01094 437 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 FUT7Q11130 342 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 P2RY14Q15391 338 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 COL13A1Q5TAT6 717 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 ARHGAP11AQ6P4F7 1023 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 ARL9Q6T311 187 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 GPALPP1Q8IXQ4 340 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 DEFB119Q8N690 84 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 BCORP1Q8N888 145 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC2A12Q8TD20 617 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 MSANTD3Q96H12 275 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 ERMAPQ96PL5 475 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 TPSD1Q9BZJ3 242 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 OR10A5Q9H207 317 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 RPS6KB2Q9UBS0 482 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 MALT1Q9UDY8 824 aa19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 TMEM184BQ9Y519 407 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-203ENST00000359902 IGHV1OR15-9A0A0B4J2B8 117 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 A8MU76 341 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 ELOCQ15369 112 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 METTL27Q8N6F8 245 aaPredicted RBP19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 OR6F1Q8NGZ6 308 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 FAM174AQ8TBP5 190 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 ADAMTS18Q8TE60 1221 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 MMABQ96EY8 250 aaPredicted RBP19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 C4orf36Q96KX1 117 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 ERVMER34-1Q9H9K5 563 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 CHRNA9Q9UGM1 479 aa19.14■□□□□ 0.66
CCDC88B-203ENST00000359902 J3QLW9 94 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 IFNGP01579 166 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF19P17023 458 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 CD53P19397 219 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 F8A1P23610 371 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 NKX2-5P52952 324 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 PSMD4P55036 377 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 OR12D2P58182 307 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 CMIPQ8IY22 773 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 Q8N402 240 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF615Q8N8J6 731 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 OR52E2Q8NGJ4 325 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 PLCL2Q9UPR0 1127 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 OR10H1Q9Y4A9 318 aa19.14■□□□□ 0.65
CCDC88B-203ENST00000359902 HTR3EA5X5Y0 456 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 SERINC4A6NH21 518 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 EFCAB7A8K855 629 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 TFECO14948 347 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF749O43361 778 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 CSTAP01040 98 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 HLA-DQB1P01920 261 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 PTBP1P26599 531 aaKnown RBP eCLIP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 SHC1P29353 583 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 HOXD12P35452 270 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 RSBN1Q5VWQ0 802 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 FAAH2Q6GMR7 532 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 VASH1Q7L8A9 365 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 RDH10Q8IZV5 341 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 LRRC17Q8N6Y2 441 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 TSTD1Q8NFU3 115 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 LMX1AQ8TE12 382 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 DEPDC7Q96QD5 511 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 SLC38A3Q99624 504 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 UCK1Q9HA47 277 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 MEIOCA2RUB1 952 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 CHURC1-FNTBB4DL54 471 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 HYAL3O43820 417 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 NDUFB2O95178 105 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 SLC2A2P11168 524 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 NME1P15531 152 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 HIST1H1CP16403 213 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 FNTBP49356 437 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 HSD17B7P56937 341 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 LCN1P1Q5VSP4 162 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 C17orf47Q8NEP4 570 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 OR4K13Q8NH42 304 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 OR51Q1Q8NH59 317 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 SGTBQ96EQ0 304 aa19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 ZNF578Q96N58 590 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 MKKSQ9NPJ1 570 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-203ENST00000359902 ICAM5Q9UMF0 924 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms