RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SLAMF9Q96A28 289 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 ARL5BQ96KC2 179 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 ALOXE3Q9BYJ1 711 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 INSL6Q9Y581 213 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 SERPINA5P05154 406 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 RHOP08100 348 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 HSD11B1LQ7Z5J1 315 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 SLC51BQ86UW2 128 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 OR56B2PQ8NGI1 322 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 OR52I1Q8NGK6 324 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 ZFAND1Q8TCF1 268 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 ADAMTS7Q9UKP4 1686 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 ANKRD34AQ69YU3 496 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 SBSNQ6UWP8 590 aa18.27■□□□□ 0.52
CCDC88B-202ENST00000356786 DNAJC25-GNG10A0A024R161 153 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 TRDV1A0A1B0GX56 115 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 TRABD2BA6NFA1 517 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 HTR3BO95264 441 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 HTR3AP46098 478 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 ASAH1Q13510 395 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 CD276Q5ZPR3 534 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 LILRB2Q8N423 598 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 ZSCAN4Q8NAM6 433 aaPredicted RBP18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 PXT1Q8NFP0 134 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 ABHD4Q8TB40 342 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 LINC01599Q8WXQ3 324 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 MALSU1Q96EH3 234 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 MBOAT4Q96T53 435 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 SPIN2AQ99865 258 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 SPIN2BQ9BPZ2 258 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 PGAP2Q9UHJ9 254 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF281Q9Y2X9 895 aa18.27■□□□□ 0.51
CCDC88B-202ENST00000356786 CHATP28329 748 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 PRKAR1BP31321 381 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 CHRNEQ04844 493 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 CLVS2Q5SYC1 327 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 IDO2Q6ZQW0 420 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC35F3Q8IY50 421 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 LMX1AQ8TE12 382 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 DUS3LQ96G46 650 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 SFXN2Q96NB2 322 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 GPATCH2Q9NW75 528 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 HHLA2Q9UM44 414 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 A0A0B4J2A0 478 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 TP53P04637 393 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 OR7D2Q96RA2 312 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 DDOQ99489 341 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 SHPKQ9UHJ6 478 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 MARF1Q9Y4F3 1742 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 hCG_1807616A0A1W2PRN6 198 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 RAB5CP51148 216 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 AQP6Q13520 282 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 GGTA1PQ4G0N0 100 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 AVPI1Q5T686 147 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 C7orf61Q8IZ16 206 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM221A6NGB7 291 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 VSTM2BA6NLU5 285 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 CNOT4O95628 575 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 HENMT1Q5T8I9 393 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM207Q6UWW9 146 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 FAM122BQ7Z309 247 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 OR1F2PQ96R84 312 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 MED17Q9NVC6 651 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 KCMF1Q9P0J7 381 aa18.26■□□□□ 0.51
CCDC88B-202ENST00000356786 MTHFD2P13995 350 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 BTG1P62324 171 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SPOCK1Q08629 439 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 CDC20Q12834 499 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 RIN1Q13671 783 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC22A25Q6T423 547 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 CCDC71LQ8N9Z2 235 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 TSTD1Q8NFU3 115 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 LUZP4Q9P127 313 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 NDRG4Q9ULP0 352 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 PLP2Q04941 152 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 C1orf61Q13536 156 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 COX20Q5RI15 118 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SLX4IPQ5VYV7 408 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 KANSL1Q7Z3B3 1105 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 OR13C2Q8NGS9 318 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SEC22CQ9BRL7 303 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 HCAR1Q9BXC0 346 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 TESQ9UGI8 421 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 DKKL1Q9UK85 242 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 C4AP0C0L4 1744 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 ARRB2P32121 409 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 ZNF136P52737 540 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 TAS2R20P59543 309 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 GLO1Q04760 184 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SH2D5Q6ZV89 423 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 LMNTD1Q8N9Z9 388 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 TMEM121BQ9BXQ6 578 aaPredicted RBP18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 PPP4R1LQ9P1A2 415 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 CAMK2AQ9UQM7 478 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 BACE2Q9Y5Z0 518 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 CDHR4A6H8M9 788 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SELENBP1Q13228 472 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 SLC9A3R2Q15599 337 aa18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 MEX3BQ6ZN04 569 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-202ENST00000356786 LKAAEAR1Q8TD35 194 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms