RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TMEM35AQ53FP2 167 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SGO1Q5FBB7 561 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MFSD4BQ5TF39 518 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CACHD1Q5VU97 1274 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 IGFL4Q6B9Z1 124 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CDC73Q6P1J9 531 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 DCDC5Q6ZRR9 648 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GDF7Q7Z4P5 450 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 IGFN1Q86VF2 1251 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KRT73Q86Y46 540 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SNX29P2Q8IUI4 249 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SIRT6Q8N6T7 355 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ARL10Q8N8L6 244 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SMYD1Q8NB12 490 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PSD4Q8NDX1 1056 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OR52I1Q8NGK6 324 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OR6Q1Q8NGQ2 317 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 WDR36Q8NI36 951 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 REPS1Q96D71 796 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ARSGQ96EG1 525 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MED8Q96G25 268 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 WBP1Q96G27 269 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 RMND5BQ96G75 393 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 PPP1R16AQ96I34 528 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PANX1Q96RD7 426 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GPX7Q96SL4 187 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 SLC30A2Q9BRI3 323 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TRMT61BQ9BVS5 477 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 YIPF3Q9GZM5 350 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZBTB20Q9HC78 741 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 DYRK4Q9NR20 520 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 JKAMPQ9P055 326 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KLHL13Q9P2N7 655 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ST6GALNAC2Q9UJ37 374 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SAMD4AQ9UPU9 718 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 AP3M1Q9Y2T2 418 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KNTC1P50748 2209 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FAM186AA6NE01 2351 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MYO7BQ6PIF6 2116 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PRB8 838 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GXYLT2A0PJZ3 443 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OR5K3A6NET4 321 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OR2W5A6NFC9 320 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SUV39H1O43463 412 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TSPAN2O60636 221 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GUCY1B2O75343 617 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ENTPD6O75354 484 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SH3BGRLO75368 114 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SLC2A10O95528 541 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CHEK2O96017 543 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TFP02787 698 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ADRB1P08588 477 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 COX7A2P14406 83 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 HNRNPA2B1P22626 353 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 CD1CP29017 333 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PBLDP30039 288 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 HMOX2P30519 316 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 HSD17B2P37059 387 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PPM1FP49593 454 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 NXPH1P58417 271 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PHEXP78562 749 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 E2F1Q01094 437 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF85Q03923 595 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 C2orf80Q0P641 193 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SLAMF1Q13291 335 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SKP2Q13309 424 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FGFBP1Q14512 234 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 COLEC12Q5KU26 742 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GPR107Q5VW38 600 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KIAA0895LQ68EN5 471 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 REEP3Q6NUK4 255 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 Q6ZSR3 168 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GALNT5Q7Z7M9 940 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 AMIGO1Q86WK6 493 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 HIPK1Q86Z02 1210 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 APCDD1LQ8NCL9 501 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GABPB2Q8TAK5 448 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 FNDC8Q8TC99 324 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TMEM255BQ8WV15 326 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PROX1Q92786 737 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 STMN2Q93045 179 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 RAD51AP1Q96B01 352 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TMEM159Q96B96 161 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 MPP4Q96JB8 637 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SLC41A2Q96JW4 573 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF582Q96NG8 517 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 WDFY2Q96P53 400 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 C17orf62Q9BQA9 187 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 POLDIP3Q9BY77 421 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 ELOVL6Q9H5J4 265 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CXorf21Q9HAI6 301 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 GPR35Q9HC97 309 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 NECTIN3Q9NQS3 549 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 LYARQ9NX58 379 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 GPR83Q9NYM4 423 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 RHCGQ9UBD6 479 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF221Q9UK13 617 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TRAPPC4Q9Y296 219 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PIAS3Q9Y6X2 628 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 U3KQV3 271 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms