RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CXorf51AA0A1B0GTR3 108 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 DPP4P27487 766 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 RAB40BQ12829 278 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 VWA2Q5GFL6 755 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 FAM205BPQ63HN1 556 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 SNIP1Q8TAD8 396 aaKnown RBP13.84□□□□□ -0.19
COL17A1-201ENST00000353479 ULBP2Q9BZM5 246 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 THSD1Q9NS62 852 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 WNT16Q9UBV4 365 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 SHISA7A6NL88 538 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 TMPRSS11DO60235 418 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 RBM34P42696 430 aaKnown RBP13.84□□□□□ -0.19
COL17A1-201ENST00000353479 ART1P52961 327 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 CEBPGP53567 150 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 TFF2Q03403 129 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 CDNFQ49AH0 187 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 SLC22A10Q63ZE4 541 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 GPR139Q6DWJ6 353 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM53Q6P2H8 277 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 MEPCEQ7L2J0 689 aaKnown RBP13.84□□□□□ -0.19
COL17A1-201ENST00000353479 RAB11FIP2Q7L804 512 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 GRAMD2AQ8IUY3 354 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 LAS2Q8IYD9 372 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 SPERTQ8NA61 448 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 SLC6A7Q99884 636 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 GLB1P16278 677 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 FASLGP48023 281 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 GAB1Q13480 694 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 PGM2L1Q6PCE3 622 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 SYCE2Q6PIF2 218 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 CCDC36Q8IYA8 594 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 AMY2BP19961 511 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 CHMP24386 653 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 TGFBR3Q03167 851 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF704Q6ZNC4 412 aaPredicted RBP13.84□□□□□ -0.19
COL17A1-201ENST00000353479 RNF113BQ8IZP6 322 aaKnown RBP13.84□□□□□ -0.19
COL17A1-201ENST00000353479 MED11Q9P086 117 aa13.84□□□□□ -0.19
COL17A1-201ENST00000353479 MRPL33O75394 65 aaKnown RBP13.83□□□□□ -0.19
COL17A1-201ENST00000353479 GIPRP48546 466 aa13.83□□□□□ -0.19
COL17A1-201ENST00000353479 PITPNBP48739 271 aa13.83□□□□□ -0.19
COL17A1-201ENST00000353479 PRR14Q9BWN1 585 aa13.83□□□□□ -0.19
COL17A1-201ENST00000353479 GSKIPQ9P0R6 139 aa13.83□□□□□ -0.19
COL17A1-201ENST00000353479 RGPD4Q7Z3J3 1758 aa13.83□□□□□ -0.19
COL17A1-201ENST00000353479 FXYD6-FXYD2A0A087WZ82 144 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TMED7-TICAM2A0A0A6YYA0 188 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 A0A1B0GWA3 101 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 OR2AT4A6NND4 320 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TEX46H3BTG2 121 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 DDAH2O95865 285 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 ELAVL1Q15717 326 aaKnown RBP13.83□□□□□ -0.2
COL17A1-201ENST00000353479 GXYLT1Q4G148 440 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF683Q8IZ20 524 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 LRRC61Q9BV99 259 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 KATNB1Q9BVA0 655 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 FXYD6Q9H0Q3 95 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 POLE4Q9NR33 117 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TMED7Q9Y3B3 224 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 MYO10Q9HD67 2058 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 SBF2Q86WG5 1849 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 DCDC2BA2VCK2 349 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 OR6C70A6NIJ9 312 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 PRKYO43930 277 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 IL9P15248 144 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 PRKAR1BP31321 381 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 SLC6A19Q695T7 634 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 SSX6Q7RTT6 188 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 C4orf36Q96KX1 117 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TNFRSF13CQ96RJ3 184 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TCEAL2Q9H3H9 227 aaPredicted RBP13.83□□□□□ -0.2
COL17A1-201ENST00000353479 SNX11Q9Y5W9 270 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 SHROOM3Q8TF72 1996 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 H7C1C5 153 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 FGF17O60258 216 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 KLK8O60259 260 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 LCN6P62502 163 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 EXT1Q16394 746 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF691Q5VV52 312 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 XKRXQ6PP77 449 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 CDX2Q99626 313 aaPredicted RBP13.83□□□□□ -0.2
COL17A1-201ENST00000353479 CDC6Q99741 560 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF850A8MQ14 1090 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 GM2AP17900 193 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 GPX2P18283 190 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 STOMP27105 288 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 GCH1P30793 250 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 AQP2P41181 271 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 DUSP5Q16690 384 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF322Q6U7Q0 402 aaPredicted RBP13.83□□□□□ -0.2
COL17A1-201ENST00000353479 ZNF836Q6ZNA1 936 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 GPR148Q8TDV2 347 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TMIGD2Q96BF3 282 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 TMEM38AQ9H6F2 299 aa13.83□□□□□ -0.2
COL17A1-201ENST00000353479 MRPL15Q9P015 296 aaKnown RBP13.83□□□□□ -0.2
COL17A1-201ENST00000353479 HTR3BO95264 441 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 TRHRP34981 398 aaPredicted RBP13.82□□□□□ -0.2
COL17A1-201ENST00000353479 CLDN17P56750 224 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 HLA-BQ31612 363 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 MBOAT2Q6ZWT7 520 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 B3GNT8Q7Z7M8 397 aa13.82□□□□□ -0.2
COL17A1-201ENST00000353479 ALG14Q96F25 216 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms