RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RNF165Q6ZSG1 346 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR51F2Q8NH61 342 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RHEBL1Q8TAI7 183 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 NEIL3Q8TAT5 605 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CD99L2Q8TCZ2 262 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 BRIX1Q8TDN6 353 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CSGALNACT1Q8TDX6 532 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 WFIKKN2Q8TEU8 576 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 EXT2Q93063 718 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ISG20Q96AZ6 181 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR1F2PQ96R84 312 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 GSTO2Q9H4Y5 243 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RHOFQ9HBH0 211 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 MSL2Q9HCI7 577 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 WBP1LQ9NX94 342 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 FOXJ2Q9P0K8 574 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR14J1Q9UGF5 321 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TGIF2-C20orf24A0A0A6YYL0 155 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TCRBV5S1A1TA0A578 114 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR52A4PA6NMU1 304 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF726A6NNF4 738 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 GABRPO00591 440 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 COCHO43405 550 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RD3LP0DJH9 198 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PSMB6P28072 239 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 S100A3P33764 101 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SLC19A1P41440 591 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CLDN12P56749 244 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RAB11AP62491 216 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CLDN10P78369 228 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF311Q5JNZ3 666 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 HENMT1Q5T8I9 393 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF697Q5TEC3 545 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 GPAT2Q6NUI2 795 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF836Q6ZNA1 936 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 DPPA4Q7L190 304 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PID1Q7Z2X4 250 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TIPARPQ7Z3E1 657 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 LRRTM1Q86UE6 522 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 POGLUT1Q8NBL1 392 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 MITD1Q8WV92 249 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 KCTD13Q8WZ19 329 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 GALNT14Q96FL9 552 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF587Q96SQ5 575 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 STACQ99469 402 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ACTRT3Q9BYD9 372 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 IPPKQ9H8X2 491 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PARP11Q9NR21 331 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR5AC2Q9NZP5 309 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 IL17BQ9UHF5 180 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 DNAJC15Q9Y5T4 150 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZCWPW2A0A1B0GU75 182 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM233B4DJY2 109 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CSO75390 466 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 NTSR2O95665 410 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CTXN2P0C2S0 81 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CD79AP11912 226 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CYP2F1P24903 491 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 IFNGR2P38484 337 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CDC34P49427 236 aaPredicted RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CDH12P55289 794 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 BACE1P56817 501 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 PMPCAQ10713 525 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ABRAXAS2Q15018 415 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RBMS2Q15434 407 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 FAM98CQ17RN3 349 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CRY2Q49AN0 593 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 FAM102BQ5T8I3 360 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ALKAL1Q6UXT8 129 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 GABRG1Q8N1C3 465 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 FAM98AQ8NCA5 519 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 OR56A1Q8NGH5 318 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 MYLIPQ8WY64 445 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 KLRG1Q96E93 195 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CNN2Q99439 309 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 MICU1Q9BPX6 476 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 DPEP2Q9H4A9 486 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SPANXA1Q9NS26 97 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 KCNE5Q9UJ90 142 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 B4DEV8 164 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RPL36A-HNRNPH2H7BZ11 118 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TBX18O95935 607 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SELENOPP49908 381 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 GGNBP1Q5YKI7 109 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 ERN2Q76MJ5 926 aaKnown RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RD3Q7Z3Z2 195 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 XYLT1Q86Y38 959 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 THNSL2Q86YJ6 484 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 NETO2Q8NC67 525 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 OR6J1Q8NGC5 347 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 LKAAEAR1Q8TD35 194 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 PSMG2Q969U7 264 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SPACA9Q96E40 222 aaPredicted RBP3.87□□□□□ -1.79
NEDD4-201ENST00000338963 SMIM8Q96KF7 97 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 APOLD1Q96LR9 279 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM74Q96NL1 305 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 RNF2Q99496 336 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 CMKLR1Q99788 373 aa3.87□□□□□ -1.79
NEDD4-201ENST00000338963 TSSK6Q9BXA6 273 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms