RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ACOT12Q8WYK0 555 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 PPP1R14AQ96A00 147 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SARAFQ96BY9 339 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 NUDT22Q9BRQ3 303 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 MRPS2Q9Y399 296 aaKnown RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ABCA2Q9BZC7 2435 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TRBV11-1A0A0K0K1C0 115 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 D6RAR5 112 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 FCMRO60667 390 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LILRB5O75023 590 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LRP3O75074 770 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 HSD11B1P28845 292 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 RORCP51449 518 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ARG2P78540 354 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SELENBP1Q13228 472 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 CDK5R2Q13319 367 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 C3orf38Q5JPI3 329 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 FAM181AQ8N9Y4 354 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 GATA6Q92908 595 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SLC38A1Q9H2H9 487 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TCEAL2Q9H3H9 227 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 A0A1W2PPW3 197 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PRAMEF25A6NGN4 478 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF208O43345 1280 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ECH1Q13011 328 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SELPLGQ14242 412 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 FAM180BQ6P0A1 224 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF574Q6ZN55 896 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 MBOAT2Q6ZWT7 520 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 LILRA2Q8N149 483 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 OR8K3Q8NH51 312 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SLC6A20Q9NP91 592 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 RXFP3Q9NSD7 469 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 VDAC3Q9Y277 283 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF443Q9Y2A4 671 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PLXNB2O15031 1838 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CDHR4A6H8M9 788 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 H2BFMP0C1H6 154 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 TACR3P29371 465 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 GPR4P46093 362 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CSRP3P50461 194 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 RIDAP52758 137 aaKnown RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ADAM8P78325 824 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SCRN3Q0VDG4 424 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ANGPT1Q15389 498 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 RNF220Q5VTB9 566 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SHISA6Q6ZSJ9 500 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PTOV1Q86YD1 416 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 UBE2J2Q8N2K1 259 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 OR7G2Q8NG99 324 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CNOT9Q92600 299 aaKnown RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SPACA9Q96E40 222 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 TM9SF2Q99805 663 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 URM1Q9BTM9 101 aaKnown RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 MENTQ9BUN1 341 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 UBQLN3Q9H347 655 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 DUSP21Q9H596 190 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 HHLA2Q9UM44 414 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 JMJD1CQ15652 2540 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PIGBOS1A0A0B4J2F0 54 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SCGNO76038 276 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 BCKDHBP21953 392 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 APOBEC1P41238 236 aaKnown RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PHC1P78364 1004 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 MAT1AQ00266 395 aaKnown RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SEC23BQ15437 767 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CEP78Q5JTW2 689 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SLC18B1Q6NT16 456 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZER1Q7Z7L7 766 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CALHM3Q86XJ0 350 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF283Q8N7M2 679 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PLPP5Q8NEB5 264 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 OR5W2Q8NH69 310 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PSMA8Q8TAA3 256 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 UCN3Q969E3 161 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SAMD8Q96LT4 415 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SAP130Q9H0E3 1048 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ABCG2Q9UNQ0 655 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CCL27Q9Y4X3 112 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PCDHGA10Q9Y5H3 936 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 NOX1Q9Y5S8 564 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 SBF1O95248 1867 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 C11orf98E9PRG8 122 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 IGHG1P01857 330 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 QPRTQ15274 297 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 FAM26EQ8N5C1 309 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 THEM6Q8WUY1 208 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF350Q9GZX5 532 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ABCB10Q9NRK6 738 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PLCXD1Q9NUJ7 323 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CNIH4Q9P003 139 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 DAPK2Q9UIK4 370 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 A0A087WZY1 265 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PRAMEF33A0A0G2JMD5 474 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PRAMEF10O60809 474 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CSTBP04080 98 aaKnown RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ZGLP1P0C6A0 271 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CD82P27701 267 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 POLR2HP52434 150 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms