RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TIGARQ9NQ88 270 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 EXOSC3Q9NQT5 275 aaKnown RBP14.54□□□□□ -0.08
LSM1-201ENST00000311351 CTPS2Q9NRF8 586 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 PLSCR4Q9NRQ2 329 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 GLRX2Q9NS18 164 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 CCM2LQ9NUG4 571 aaPredicted RBP14.54□□□□□ -0.08
LSM1-201ENST00000311351 KLHL13Q9P2N7 655 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 P2RX2Q9UBL9 471 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 MED13LQ71F56 2210 aa14.54□□□□□ -0.08
LSM1-201ENST00000311351 DSPPQ9NZW4 1301 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 NR5A2O00482 541 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 CASKO14936 926 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 SMAD9O15198 467 aaKnown RBP14.53□□□□□ -0.08
LSM1-201ENST00000311351 CD1EP15812 388 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 HOXB9P17482 250 aaPredicted RBP14.53□□□□□ -0.08
LSM1-201ENST00000311351 MRPL19P49406 292 aaKnown RBP14.53□□□□□ -0.08
LSM1-201ENST00000311351 PCYT1AP49585 367 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 SYT14P1Q58G82 188 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 MRPL2Q5T653 305 aaKnown RBP14.53□□□□□ -0.08
LSM1-201ENST00000311351 PAMR1Q6UXH9 720 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 C22orf34Q6ZV56 151 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 VRK2Q86Y07 508 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 FUNDC1Q8IVP5 155 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 TUSC5Q8IXB3 177 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 CKAP2Q8WWK9 683 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 CCDC106Q9BWC9 280 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 PLEKHF2Q9H8W4 249 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 CCDC167Q9P0B6 97 aa14.53□□□□□ -0.08
LSM1-201ENST00000311351 MAP1AP78559 2803 aaPredicted RBP14.52□□□□□ -0.08
LSM1-201ENST00000311351 GOSR1O95249 250 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 FESP07332 822 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 NUDT7P0C024 238 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 PABPC4LP0CB38 370 aaKnown RBP14.52□□□□□ -0.09
LSM1-201ENST00000311351 TFPIP10646 304 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 CCNA2P20248 432 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 IDH2P48735 452 aaKnown RBP14.52□□□□□ -0.09
LSM1-201ENST00000311351 RAC3P60763 192 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 RNPS1Q15287 305 aaKnown RBP14.52□□□□□ -0.09
LSM1-201ENST00000311351 TMEM201Q5SNT2 666 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 GTF2IRD2BQ6EKJ0 949 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 STAC2Q6ZMT1 411 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 ZNF836Q6ZNA1 936 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 GRINAQ7Z429 371 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 GTF2IRD2Q86UP8 949 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 CMIPQ8IY22 773 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 SLC25A43Q8WUT9 341 aaPredicted RBP14.52□□□□□ -0.09
LSM1-201ENST00000311351 SLC38A5Q8WUX1 472 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 NINJ1Q92982 152 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 TMEM19Q96HH6 336 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 MAGEB18Q96M61 343 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 PSD2Q9BQI7 771 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 OR11A1Q9GZK7 315 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 MTHFD2LQ9H903 347 aaPredicted RBP14.52□□□□□ -0.09
LSM1-201ENST00000311351 SERINC1Q9NRX5 453 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 RLIMQ9NVW2 624 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 CHRNA9Q9UGM1 479 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 ING1Q9UK53 422 aaPredicted RBP14.52□□□□□ -0.09
LSM1-201ENST00000311351 PCDHB14Q9Y5E9 798 aa14.52□□□□□ -0.09
LSM1-201ENST00000311351 ROS1P08922 2347 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 DEFB108AA8MXU0 73 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 PRKD3O94806 890 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 DBIP07108 87 aaKnown RBP14.51□□□□□ -0.09
LSM1-201ENST00000311351 TFPTP0C1Z6 253 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 IL7RP16871 459 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 CRYGSP22914 178 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 MAGEA8P43361 318 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 DIO1P49895 249 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 CRISP3P54108 245 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 BLOC1S3Q6QNY0 202 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 TFAP2EQ6VUC0 442 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 MSRB3Q8IXL7 192 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 PEX5LQ8IYB4 626 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 OR52P1PQ8NH57 321 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 SPDL1Q96EA4 605 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 PIK3IP1Q96FE7 263 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 ARL5BQ96KC2 179 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 ZNF300Q96RE9 604 aaPredicted RBP14.51□□□□□ -0.09
LSM1-201ENST00000311351 SLC25A37Q9NYZ2 338 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 SLAMF8Q9P0V8 285 aa14.51□□□□□ -0.09
LSM1-201ENST00000311351 ZNF443Q9Y2A4 671 aaPredicted RBP14.51□□□□□ -0.09
LSM1-201ENST00000311351 A0A096LPI6 279 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 SULT2B1O00204 365 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 CLIC1O00299 241 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 ATE1O95260 518 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 THBDP07204 575 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 GKN3PP0CG01 181 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 DNASE1P24855 282 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 APOBEC1P41238 236 aaKnown RBP14.5□□□□□ -0.09
LSM1-201ENST00000311351 EPS8Q12929 822 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 GNA13Q14344 377 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 SQLEQ14534 574 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 RGNQ15493 299 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 LIN52Q52LA3 116 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 AGKQ53H12 422 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 PAGE3Q5JUK9 113 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 ABLIM2Q6H8Q1 611 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 SPNS3Q6ZMD2 512 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 TMPPEQ6ZT21 453 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 BEND4Q6ZU67 534 aa14.5□□□□□ -0.09
LSM1-201ENST00000311351 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms