RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 LMX1AQ8TE12 382 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SMAP2Q8WU79 429 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 BRI3BPQ8WY22 251 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SGCZQ96LD1 299 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 MYOCQ99972 504 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 OR51I1Q9H343 314 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TXNRD2Q9NNW7 524 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SPG21Q9NZD8 308 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 CAMK2AQ9UQM7 478 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SNRPGP15A8MWD9 76 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 M0R082 166 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 DVL1O14640 695 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SLC1A3P43003 542 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 GIPRP48546 466 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 DVL1P1P54792 670 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 IFITM3Q01628 133 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PLA2G7Q13093 441 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PDE7AQ13946 482 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ATAT1Q5SQI0 421 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 NRSN1Q8IZ57 195 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 MAML2Q8IZL2 1156 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 RNF113BQ8IZP6 322 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 AQP11Q8NBQ7 271 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 DYRK2Q92630 601 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 MRPS31Q92665 395 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 RNF170Q96K19 258 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PRRC1Q96M27 445 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 GOLGA2P5Q9HBQ8 144 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 RXFP3Q9NSD7 469 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 GJD2Q9UKL4 321 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PHIPQ8WWQ0 1821 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TGFB1P01137 390 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 AMY2AP04746 511 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 RAB40ALP0C0E4 278 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 LIPCP11150 499 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 IL12BP29460 328 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ARL16Q0P5N6 197 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 BAK1Q16611 211 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ELFN2Q5R3F8 820 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ZNF648Q5T619 568 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 PLCXD3Q63HM9 321 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TNFAIP8L2Q6P589 184 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 TRAM1L1Q8N609 369 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 RAB40AQ8WXH6 277 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 NUDT16L1Q9BRJ7 211 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 SLC35A5Q9BS91 424 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 NMNAT1Q9HAN9 279 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 GIMAP2Q9UG22 337 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FBXW2Q9UKT8 454 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TSPAN11A1L157 253 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ZNF320A2RRD8 509 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 POM121BA6NF01 834 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 HELTA6NFD8 242 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ZNF726A6NNF4 738 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 B4E171 279 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 NSA2O95478 260 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 GIPP09681 153 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 CD3GP09693 182 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 HOXA9P31269 272 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FASLGP48023 281 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 EVX1P49640 407 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ART1P52961 327 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 DLX5P56178 289 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FXYD4P59646 89 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 MRPS34P82930 218 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 HMGCS1Q01581 520 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TAF10Q12962 218 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 NKPD1Q17RQ9 610 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 GLYR1Q49A26 553 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 PRSS55Q6UWB4 352 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 TECPR1Q7Z6L1 1165 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PTOV1Q86YD1 416 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 HORMAD2Q8N7B1 307 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SLC30A7Q8NEW0 376 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 OR5M3Q8NGP4 307 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 WFIKKN2Q8TEU8 576 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 RSPRY1Q96DX4 576 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 RBM18Q96H35 190 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 OPALINQ96PE5 141 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SLC6A16Q9GZN6 736 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SLC28A3Q9HAS3 691 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PPIL1Q9Y3C6 166 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 A0A1W2PQL4 384 aaPredicted RBP6□□□□□ -1.45
VPS35-201ENST00000299138 BLOC1S5-TXNDC5H3BN57 136 aa6□□□□□ -1.45
VPS35-201ENST00000299138 BMPR1BO00238 502 aa6□□□□□ -1.45
VPS35-201ENST00000299138 DSCR3O14972 297 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CTDSPLO15194 276 aa6□□□□□ -1.45
VPS35-201ENST00000299138 CBR3O75828 277 aa6□□□□□ -1.45
VPS35-201ENST00000299138 NUDT3O95989 172 aa6□□□□□ -1.45
VPS35-201ENST00000299138 RAF1P04049 648 aa6□□□□□ -1.45
VPS35-201ENST00000299138 GJB1P08034 283 aa6□□□□□ -1.45
VPS35-201ENST00000299138 NME1P15531 152 aaKnown RBP6□□□□□ -1.45
VPS35-201ENST00000299138 BMPR1AP36894 532 aa6□□□□□ -1.45
VPS35-201ENST00000299138 SAXO2Q658L1 398 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TMEM205Q6UW68 189 aa6□□□□□ -1.45
VPS35-201ENST00000299138 TMEM107Q6UX40 140 aa6□□□□□ -1.45
VPS35-201ENST00000299138 SPICQ8N5J4 248 aa6□□□□□ -1.45
VPS35-201ENST00000299138 NETO2Q8NC67 525 aa6□□□□□ -1.45
VPS35-201ENST00000299138 SLC24A4Q8NFF2 622 aa6□□□□□ -1.45
VPS35-201ENST00000299138 OR4E2Q8NGC2 313 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms