RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 COMTD1Q86VU5 262 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 KMT5CQ86Y97 462 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 OR52E2Q8NGJ4 325 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 OR9A2Q8NGT5 310 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 ZFAND1Q8TCF1 268 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 ZNF480Q8WV37 535 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 NT5C3BQ969T7 300 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 SLC46A1Q96NT5 459 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 INSM2Q96T92 566 aaPredicted RBP11.95□□□□□ -0.5
USP40-201ENST00000251722 AMBNQ9NP70 447 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 NUBP2Q9Y5Y2 271 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 PPP1R2P9O14990 202 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 CBLP22681 906 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 NUDT6P53370 316 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 IL10RAQ13651 578 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 TMEM244Q5VVB8 128 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 LRFN4Q6PJG9 635 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 SPATC1Q76KD6 591 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 LSMEM2Q8N112 164 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 TMEM239Q8WW34 195 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 C19orf12Q9NSK7 152 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 RIMS3Q9UJD0 308 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 PADI1Q9ULC6 663 aa11.95□□□□□ -0.5
USP40-201ENST00000251722 A6NL46 340 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 TARM1B6A8C7 271 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 BET1O15155 118 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 EIF1BO60739 113 aaKnown RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 IGHG1P01857 330 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 ETFAP13804 333 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 CDC20Q12834 499 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 KCNAB2Q13303 367 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 NNATQ16517 81 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 PAQR9Q6ZVX9 377 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 RPS27LQ71UM5 84 aaKnown RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 OR52R1Q8NGF1 315 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 ZNF417Q8TAU3 575 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 ITGB4P16144 1822 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 PHIPQ8WWQ0 1821 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 TCAPO15273 167 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 SMIM6P0DI80 62 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 SLC35A1P78382 337 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 CAMK2DQ13557 499 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 SF3A2Q15428 464 aaKnown RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 ZNF551Q7Z340 670 aaPredicted RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 TMEFF1Q8IYR6 380 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 C22orf15Q8WYQ4 148 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 MUS81Q96NY9 551 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 ASF1BQ9NVP2 202 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 TOXO94900 526 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 CTSCP53634 463 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 KEAP1Q14145 624 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 AFMIDQ63HM1 303 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 ZNF705AQ6ZN79 300 aaPredicted RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 CEACAM19Q7Z692 300 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 DEFB123Q8N688 67 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 EIF5A2Q9GZV4 153 aaKnown RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 NLKQ9UBE8 527 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 GIMAP2Q9UG22 337 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 USP54Q70EL1 1684 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 SLC33A1O00400 549 aaPredicted RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 TGOLN2O43493 480 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 SIGLEC6O43699 453 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 ADAM23O75077 832 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 DIRAS1O95057 198 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 HAAOP46952 286 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 NTRK2Q16620 822 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 LETMD1Q6P1Q0 360 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 SPEM1Q8N4L4 309 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 OR51Q1Q8NH59 317 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 LHFPL5Q8TAF8 219 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 NUDT16L1Q9BRJ7 211 aaKnown RBP11.94□□□□□ -0.5
USP40-201ENST00000251722 PRDM9Q9NQV7 894 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 HIF3AQ9Y2N7 669 aa11.94□□□□□ -0.5
USP40-201ENST00000251722 PLSCR5A0PG75 271 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 SLC35F4A4IF30 521 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 ARGFXA6NJG6 315 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 F7P08709 466 aaPredicted RBP11.93□□□□□ -0.5
USP40-201ENST00000251722 AMY2BP19961 511 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 ELK4P28324 431 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 DPTQ07507 201 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 DYRK1AQ13627 763 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 LBHQ53QV2 105 aaPredicted RBP11.93□□□□□ -0.5
USP40-201ENST00000251722 SLC22A10Q63ZE4 541 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 OR5AK2Q8NH90 309 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 TTC9Q92623 222 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 ZNF442Q9H7R0 627 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 CYB5R1Q9UHQ9 305 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 ZNF230Q9UIE0 474 aaPredicted RBP11.93□□□□□ -0.5
USP40-201ENST00000251722 LOC100509620A0A075B734 347 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 RFXAPO00287 272 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 GPR171O14626 319 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 GNRHRP30968 328 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 SRYQ05066 204 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 CDONQ4KMG0 1287 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 TMEM69Q5SWH9 247 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 NRMQ8IXM6 262 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 SLC35F2Q8IXU6 374 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 MMP21Q8N119 569 aa11.93□□□□□ -0.5
USP40-201ENST00000251722 OR11L1Q8NGX0 322 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms