RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 HPF1Q9NWY4 346 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 B3GNT2Q9NY97 397 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 TRIM10Q9UDY6 481 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 IL19Q9UHD0 177 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 OPN4Q9UHM6 478 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 XPO7Q9UIA9 1087 aaKnown RBP1.98□□□□□ -2.09
CD44-239ENST00000639002 SRCAPQ6ZRS2 3230 aa1.98□□□□□ -2.09
CD44-239ENST00000639002 RNF103-CHMP3A0A140T963 221 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 SLC9B1P1A6NJY1 282 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 MT-ATP6P00846 226 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 RALAP11233 206 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 MAPK3P27361 379 aaPredicted RBP1.97□□□□□ -2.09
CD44-239ENST00000639002 HOXA9P31269 272 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 EPHX2P34913 555 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 PEX19P40855 299 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 PRPHP41219 470 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 ACTA1P68133 377 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 DEFB116Q30KQ4 102 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 TIGITQ495A1 244 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 KRTAP13-2Q52LG2 175 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 ZNF836Q6ZNA1 936 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 RABEPKQ7Z6M1 372 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 PNKDQ8N490 385 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 ZNF709Q8N972 641 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 GIMAP1Q8WWP7 306 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 SLC5A11Q8WWX8 675 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 STARD8Q92502 1023 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 CELF6Q96J87 481 aaKnown RBP1.97□□□□□ -2.09
CD44-239ENST00000639002 CEP170P1Q96L14 293 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 ZNF578Q96N58 590 aaPredicted RBP1.97□□□□□ -2.09
CD44-239ENST00000639002 RPAP3Q9H6T3 665 aaPredicted RBP1.97□□□□□ -2.09
CD44-239ENST00000639002 SYTL2Q9HCH5 934 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 WRAP73Q9P2S5 460 aaPredicted RBP1.97□□□□□ -2.09
CD44-239ENST00000639002 P2RX2Q9UBL9 471 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 FETUBQ9UGM5 382 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 APPL1Q9UKG1 709 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 ERCC6L2Q5T890 1561 aa1.97□□□□□ -2.09
CD44-239ENST00000639002 SYNJ2BP-COX16A0A087WUM0 186 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 A0A0U1RQS6 177 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 RNF222A6NCQ9 220 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 NOL3O60936 208 aaKnown RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 BCAS2O75934 225 aaPredicted RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 CXCL10P02778 98 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 H2AFXP16104 143 aaPredicted RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 CRISP2P16562 243 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 ARF4P18085 180 aaPredicted RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 SERPINA2P20848 420 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 AHCYP23526 432 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 PRDX2P32119 198 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 HSPA1LP34931 641 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 LASP1Q14847 261 aaKnown RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 PDK1Q15118 436 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 TAF7Q15545 349 aaPredicted RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 CCDC57Q2TAC2 916 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 PARP10Q53GL7 1025 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 HSP90AA5PQ58FG0 334 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 OR6B2Q6IFH4 312 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 RAB12Q6IQ22 244 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 PLBD1Q6P4A8 553 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 WDR88Q6ZMY6 472 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 LINC01561Q8N1V8 128 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 NKAPP1Q8N9T2 125 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 OR10G2Q8NGC3 310 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 M1APQ8TC57 530 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 PAQR8Q8TEZ7 354 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 GIPC3Q8TF64 312 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 SLC13A3Q8WWT9 602 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 FEM1AQ9BSK4 669 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 SPXQ9BT56 116 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 WRAP53Q9BUR4 548 aaKnown RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 NFKBIZQ9BYH8 718 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 TMEM231Q9H6L2 316 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 EML4Q9HC35 981 aaKnown RBP1.96□□□□□ -2.1
CD44-239ENST00000639002 SH3BGRL2Q9UJC5 107 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 DNPEPQ9ULA0 475 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 RABL2BQ9UNT1 228 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 PLLPQ9Y342 182 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 KIF3AQ9Y496 699 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 CABIN1Q9Y6J0 2220 aa1.96□□□□□ -2.1
CD44-239ENST00000639002 CACNA1GO43497 2377 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 FCN1O00602 326 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 RASGRF2O14827 1237 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 GUCA1CO95843 209 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 ALPPP05187 535 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 GSTT2P0CG29 244 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 GSTT2BP0CG30 244 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 GAP43P17677 238 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 PRDX6P30041 224 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 SFNP31947 248 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 TNNT2P45379 298 aaPredicted RBP1.95□□□□□ -2.1
CD44-239ENST00000639002 SH3BGRP55822 239 aaPredicted RBP1.95□□□□□ -2.1
CD44-239ENST00000639002 SLC26A5P58743 744 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 POLR2FP61218 127 aaKnown RBP1.95□□□□□ -2.1
CD44-239ENST00000639002 OSTNP61366 133 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 ARFRP1Q13795 201 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 SCYL2Q6P3W7 929 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 CCDC73Q6ZRK6 1079 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 LRRC70Q7Z2Q7 622 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 ZNF619Q8N2I2 560 aa1.95□□□□□ -2.1
CD44-239ENST00000639002 PINX1Q96BK5 328 aaKnown RBP1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms