RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SCN3BQ9NY72 215 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TMEM5Q9Y2B1 443 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TPRKBQ9Y3C4 175 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 EP300Q09472 2414 aaPredicted RBP15.41■□□□□ 0.06
CLN3-252ENST00000636907 A0A087WUJ7 227 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 NSG1A0A0A6YYJ2 146 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 UNC119BA6NIH7 251 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 GMFGO60234 142 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 MPZL2O60487 215 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 FUT1P19526 365 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 MST1P26927 711 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 SLC6A8P48029 635 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 SMSP52788 366 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 SLC35A2P78381 396 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TEKQ02763 1124 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TMPRSS11FQ6ZWK6 438 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TMCO6Q96DC7 493 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 IL4I1Q96RQ9 567 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 RASL10BQ96S79 203 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 DUSP21Q9H596 190 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 ZNF160Q9HCG1 818 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 IL20Q9NYY1 176 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 TVP23BQ9NYZ1 205 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 ICAM5Q9UMF0 924 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 CDH10Q9Y6N8 788 aa15.41■□□□□ 0.06
CLN3-252ENST00000636907 MASP2O00187 686 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 SNRPGP62308 76 aaKnown RBP15.4■□□□□ 0.06
CLN3-252ENST00000636907 RPS15P62841 145 aaKnown RBP15.4■□□□□ 0.06
CLN3-252ENST00000636907 CRYZQ08257 329 aaKnown RBP15.4■□□□□ 0.06
CLN3-252ENST00000636907 SSPNQ14714 243 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 CLEC12AQ5QGZ9 265 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 SLC27A4Q6P1M0 643 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 KCTD8Q6ZWB6 473 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 NUP54Q7Z3B4 507 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 ATG4DQ86TL0 474 aaPredicted RBP15.4■□□□□ 0.06
CLN3-252ENST00000636907 MARCH9Q86YJ5 346 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 CDK20Q8IZL9 346 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 CLDN22Q8N7P3 220 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 ZNF540Q8NDQ6 660 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 ZNF563Q8TA94 476 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 DUSP19Q8WTR2 217 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 OSTF1Q92882 214 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 TSSK6Q9BXA6 273 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 PLCXD1Q9NUJ7 323 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 TBC1D23Q9NUY8 699 aa15.4■□□□□ 0.06
CLN3-252ENST00000636907 ENO4A6NNW6 628 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 EFCAB9A8MZ26 197 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 FBXO45P0C2W1 286 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 F8A1P23610 371 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 ITPKBP27987 946 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 TMED10P49755 219 aaKnown RBP15.39■□□□□ 0.05
CLN3-252ENST00000636907 NUDT6P53370 316 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 DNASE1L3Q13609 305 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 TOMM34Q15785 309 aaPredicted RBP15.39■□□□□ 0.05
CLN3-252ENST00000636907 MRGPREQ86SM8 312 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 SPARTQ8N0X7 666 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 TCEANCQ8N8B7 351 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 NLGN4YQ8NFZ3 816 aaPredicted RBP15.39■□□□□ 0.05
CLN3-252ENST00000636907 OR4Q3Q8NH05 313 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 OR5W2Q8NH69 310 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 RNF138Q8WVD3 245 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 TRUB1Q8WWH5 349 aaKnown RBP15.39■□□□□ 0.05
CLN3-252ENST00000636907 TTC9Q92623 222 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 AMBNQ9NP70 447 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 ERVK-18Q9QC07 812 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 IL20RAQ9UHF4 553 aa15.39■□□□□ 0.05
CLN3-252ENST00000636907 PRKYO43930 277 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 RAD1O60671 282 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SAGP10523 405 aaPredicted RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 PNMTP11086 282 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 DLSTP36957 453 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SLC1A3P43003 542 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 PCYT1AP49585 367 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 P2RX1P51575 399 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 FXYD6P3P58550 94 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 CSNK2BP67870 215 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SLC30A6Q6NXT4 461 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SLC15A4Q8N697 577 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 OR10G3Q8NGC4 313 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 OR8J1Q8NGP2 316 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 OR13C2Q8NGS9 318 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 B4GALNT2Q8NHY0 566 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 FANK1Q8TC84 345 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 TMIGD2Q96BF3 282 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 SPACA9Q96E40 222 aaPredicted RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 SAMD8Q96LT4 415 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 CCNL2Q96S94 520 aaPredicted RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 POLDIP3Q9BY77 421 aaKnown RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 FAM192AQ9GZU8 254 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 OR52D1Q9H346 318 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 CFAP54Q96N23 3096 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 IGKV1D-42A0A075B6H8 117 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 C2orf72A6NCS6 295 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 ELOA3DA6NLF2 546 aaPredicted RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 TERTO14746 1132 aaKnown RBP15.38■□□□□ 0.05
CLN3-252ENST00000636907 MAN1A2O60476 641 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 ITGA10O75578 1167 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 NUDT14O95848 222 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 PGCP20142 388 aa15.38■□□□□ 0.05
CLN3-252ENST00000636907 TACR3P29371 465 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms