RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZNF311Q5JNZ3 666 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 AP1ARQ63HQ0 302 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 ZNF836Q6ZNA1 936 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 SERPINA11Q86U17 422 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 PTOV1Q86YD1 416 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 ZZZ3Q8IYH5 903 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 UBQLNLQ8IYU4 475 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 FAM71CQ8NEG0 241 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 BCAS4Q8TDM0 211 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 CNOT9Q92600 299 aaKnown RBP16.07■□□□□ 0.16
CLN3-247ENST00000636351 NRGNQ92686 78 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 RNF145Q96MT1 663 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 ZNF607Q96SK3 696 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 SPATA5L1Q9BVQ7 753 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 SPATA9Q9BWV2 254 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 ARMC7Q9H6L4 198 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 IFT52Q9Y366 437 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 FAM215AQ9Y5M1 114 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 PCNX3Q9H6A9 2034 aa16.07■□□□□ 0.16
CLN3-247ENST00000636351 SPG11Q96JI7 2443 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 HCFC1P51610 2035 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 SEC14L5O43304 696 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 WDR1O75083 606 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 THBS1P07996 1170 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 PABPC4LP0CB38 370 aaKnown RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 GABRA1P14867 456 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 UQCRBP14927 111 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 ETS2P15036 469 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 PCGF2P35227 344 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 SLC6A8P48029 635 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 B3GALT5-AS1P59052 145 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 QPRTQ15274 297 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 TOMM34Q15785 309 aaPredicted RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 RNF220Q5VTB9 566 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 B3GNT6Q6ZMB0 384 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 NET1Q7Z628 596 aaPredicted RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 SLC30A8Q8IWU4 369 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 ULK2Q8IYT8 1036 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 GTPBP8Q8N3Z3 284 aaPredicted RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 ZNF563Q8TA94 476 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 GPR119Q8TDV5 335 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 WDYHV1Q96HA8 205 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 TTYH2Q9BSA4 534 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 EXOSC3Q9NQT5 275 aaKnown RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 RLIMQ9NVW2 624 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 DNAJB12Q9NXW2 375 aaKnown RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 STOML1Q9UBI4 398 aa16.06■□□□□ 0.16
CLN3-247ENST00000636351 GPC6Q9Y625 555 aaPredicted RBP16.06■□□□□ 0.16
CLN3-247ENST00000636351 LINC01387J3KSC0 135 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 LINGO3P0C6S8 592 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 GLI4P10075 376 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 PEPDP12955 493 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 ME2P23368 584 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 DNAJA1P31689 397 aaKnown RBP16.05■□□□□ 0.16
CLN3-247ENST00000636351 EIF1P41567 113 aaKnown RBP16.05■□□□□ 0.16
CLN3-247ENST00000636351 LHX2P50458 406 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 SLC7A2P52569 658 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 C1orf185Q5T7R7 199 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 RTL6Q6ICC9 239 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 ZNF440Q8IYI8 595 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 MEIOBQ8N635 442 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 NPAS1Q99742 590 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 HOPXQ9BPY8 73 aaPredicted RBP16.05■□□□□ 0.16
CLN3-247ENST00000636351 PRDM14Q9GZV8 571 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 TMEM185BQ9H7F4 350 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 ARL8BQ9NVJ2 186 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 TAGLN3Q9UI15 199 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 SLC13A4Q9UKG4 626 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 AP3M1Q9Y2T2 418 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 ZNF337Q9Y3M9 751 aa16.05■□□□□ 0.16
CLN3-247ENST00000636351 HEATR5AQ86XA9 2040 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 A0A0G2JNJ9 132 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 C7orf72A4D263 438 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 CDHR4A6H8M9 788 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 CCT8L1PA6NM43 557 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 FAM220BPB1ANY3 271 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 SERPINB7O75635 380 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 PRKCAP17252 672 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 EEF1A1P68104 462 aaKnown RBP16.04■□□□□ 0.16
CLN3-247ENST00000636351 MXRA7P84157 204 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 ZSWIM7Q19AV6 140 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 VMACQ2NL98 169 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 TMEM44Q2T9K0 475 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 INTS11Q5TA45 600 aaKnown RBP16.04■□□□□ 0.16
CLN3-247ENST00000636351 POMZP3Q6PJE2 187 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 HACD2Q6Y1H2 254 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 CHMP1BQ7LBR1 199 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 ARMC8Q8IUR7 673 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 FBXO27Q8NI29 283 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 TMEM234Q8WY98 164 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 REXO5Q96IC2 774 aaKnown RBP16.04■□□□□ 0.16
CLN3-247ENST00000636351 SLC24A3Q9HC58 644 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 Q9UFV3 132 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 AP4B1Q9Y6B7 739 aa16.04■□□□□ 0.16
CLN3-247ENST00000636351 INTS1Q8N201 2190 aaKnown RBP16.03■□□□□ 0.16
CLN3-247ENST00000636351 PRORSD1PA6NEY8 169 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 CFAP73A6NFT4 308 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 AHRRA9YTQ3 701 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 AP3D1O14617 1153 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 GKN3PP0CG01 181 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms