RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GPN2Q9H9Y4 310 aaPredicted RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 EML4Q9HC35 981 aaKnown RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 MTRF1LQ9UGC7 380 aaKnown RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 NUFIP1Q9UHK0 495 aaKnown RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 OPN4Q9UHM6 478 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 XPO7Q9UIA9 1087 aaKnown RBP1.21□□□□□ -2.22
SCN1A-208ENST00000625916 UGT2A1Q9Y4X1 527 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 CCDC7Q96M83 1385 aa1.21□□□□□ -2.22
SCN1A-208ENST00000625916 GPR179Q6PRD1 2367 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PPIAL4EA0A075B759 164 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PPIAL4CA0A0B4J2A2 164 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 FAM74A7A6NL05 159 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 WASH3PC4AMC7 463 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PPIAL4DF5H284 164 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 SULT2B1O00204 365 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 HCN1O60741 890 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 KERAO60938 352 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 ZNF780AO75290 641 aaPredicted RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PPIAL4FP0DN26 164 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PDHBP11177 359 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 RNH1P13489 461 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 NMT1P30419 496 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 ADSSP30520 456 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 AKT2P31751 481 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PLK1P53350 603 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 SH3BGRP55822 239 aaPredicted RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CHRNB3Q05901 458 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 EXOSC2Q13868 293 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 LASP1Q14847 261 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 NDUFA9Q16795 377 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 TMEM52BQ4KMG9 183 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 FAM74A3Q4VXF1 159 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 LIPNQ5VXI9 398 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 WASH2PQ6VEQ5 465 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 TMEM184AQ6ZMB5 413 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 LANCL3Q6ZV70 420 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 EFCAB13Q8IY85 973 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PNKDQ8N490 385 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CYB561D1Q8N8Q1 229 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CNIH3Q8TBE1 160 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 FCGR1BQ92637 280 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PINX1Q96BK5 328 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 RPUSD4Q96CM3 377 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CABS1Q96KC9 395 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 NSMCE2Q96MF7 247 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 OR5B2Q96R09 309 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 OR2M2Q96R28 347 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CYP2S1Q96SQ9 504 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 MCHR1Q99705 422 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 RASL11BQ9BPW5 248 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 ATG10Q9H0Y0 220 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 PLGRKTQ9HBL7 147 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 LPAR2Q9HBW0 351 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 SYTL2Q9HCH5 934 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 AIG1Q9NVV5 245 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CNOT2Q9NZN8 540 aaKnown RBP1.2□□□□□ -2.22
SCN1A-208ENST00000625916 IL20RAQ9UHF4 553 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 CYTH4Q9UIA0 394 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 APPL1Q9UKG1 709 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 USP16Q9Y5T5 823 aa1.2□□□□□ -2.22
SCN1A-208ENST00000625916 MAP3K15Q6ZN16 1313 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 LRP4O75096 1905 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.19□□□□□ -2.22
SCN1A-208ENST00000625916 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CFAP73A6NFT4 308 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 LRRC30A6NM36 301 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 GFYI3L273 518 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 OR10H3O60404 316 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 ECI2O75521 394 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 KIAA0754O94854 1291 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 LALBAP00709 142 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 P04436 131 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 GIPP09681 153 aaPredicted RBP1.19□□□□□ -2.22
SCN1A-208ENST00000625916 TSPY4P0CV99 314 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 TSPY10P0CW01 314 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CCDC192P0DO97 292 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 ALPPL2P10696 532 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CLUP10909 449 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 HNF1AP20823 631 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CALB2P22676 271 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 AHCYP23526 432 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 HOXA9P31269 272 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CCDC173Q0VFZ6 552 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CBX3Q13185 183 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 PDIA5Q14554 519 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 OR6B2Q6IFH4 312 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 NEK5Q6P3R8 708 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 APTXQ7Z2E3 356 aaKnown RBP1.19□□□□□ -2.22
SCN1A-208ENST00000625916 OR52E1Q8NGJ3 308 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 UBALD1Q8TB05 177 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 GIPC3Q8TF64 312 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 CITED1Q99966 193 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 NRIP2Q9BQI9 281 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 SLC30A2Q9BRI3 323 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 TBCDQ9BTW9 1192 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 MRPL39Q9NYK5 338 aaKnown RBP1.19□□□□□ -2.22
SCN1A-208ENST00000625916 TREM2Q9NZC2 230 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 C6orf203Q9P0P8 240 aaPredicted RBP1.19□□□□□ -2.22
SCN1A-208ENST00000625916 NUDCQ9Y266 331 aa1.19□□□□□ -2.22
SCN1A-208ENST00000625916 ASF1AQ9Y294 204 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms