RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TNFRSF10DQ9UBN6 386 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 MUTYHQ9UIF7 546 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 SIGLEC7Q9Y286 467 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 TMEM131Q92545 1883 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 ZDBF2Q9HCK1 2354 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 A0A0B4J2E0 115 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 A0A1B0GX12 115 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 C12orf71A8MTZ7 269 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 DCNP07585 359 aaKnown RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 GPR3P46089 330 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 RORCP51449 518 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 RACK1P63244 317 aaKnown RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 NXNL2Q5VZ03 156 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 SPATC1Q76KD6 591 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 BPHLQ86WA6 291 aaPredicted RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 CDK20Q8IZL9 346 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 OR8H2Q8N162 312 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 TMEM99Q8N816 258 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 OR10H4Q8NGA5 316 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 AHCYL2Q96HN2 611 aaKnown RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 SDHCQ99643 169 aaPredicted RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 KLHDC3Q9BQ90 382 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 ARHGAP9Q9BRR9 750 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 ZNF649Q9BS31 505 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 OR8D2Q9GZM6 311 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 MRPS33Q9Y291 106 aaKnown RBP9.79□□□□□ -0.84
CUX1-221ENST00000622516 RNF215Q9Y6U7 377 aa9.79□□□□□ -0.84
CUX1-221ENST00000622516 C17orf105B2RV13 164 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 TMEM150CB9EJG8 249 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SNX4O95219 450 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 NSA2O95478 260 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 PAICSP22234 425 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 HTR1FP30939 366 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CCR4P51679 360 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 PRKCDQ05655 676 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 COL13A1Q5TAT6 717 aaPredicted RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 C1orf189Q5VU69 101 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SHISA6Q6ZSJ9 500 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 UTS2BQ765I0 119 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 BCORP1Q8N888 145 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SLC37A3Q8NCC5 494 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 UFD1Q92890 307 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SLC30A2Q9BRI3 323 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CCDC86Q9H6F5 360 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 ABCB9Q9NP78 766 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 KRCC1Q9NPI7 259 aaPredicted RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 TIGARQ9NQ88 270 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 PRDM9Q9NQV7 894 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SF3B6Q9Y3B4 125 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 TMEM129A0AVI4 362 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SHISA3A0PJX4 238 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 OR2B3O76000 313 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CSTAP01040 98 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 GABRA4P48169 554 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CFHR1Q03591 330 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 DMWDQ09019 674 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CRMP1Q14194 572 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 VWA2Q5GFL6 755 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 ZNF362Q5T0B9 420 aaPredicted RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 TSSK4Q6SA08 328 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CCDC190Q86UF4 302 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 ASB15Q8WXK1 588 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SENP5Q96HI0 755 aaPredicted RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 Q9N2J8 555 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 MRPS18AQ9NVS2 196 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 PLCL2Q9UPR0 1127 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 ADAM18Q9Y3Q7 739 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 SIRT4Q9Y6E7 314 aaPredicted RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 CACNA1EQ15878 2313 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 PCNX3Q9H6A9 2034 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 TAF4O00268 1085 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 HMGN1P05114 100 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 ZNF45Q02386 682 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 RUNX1T1Q06455 604 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 DSG2Q14126 1118 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 PLK5Q496M5 336 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 PRPF38BQ5VTL8 546 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 RNLSQ5VYX0 342 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 PTCRAQ6ISU1 281 aaPredicted RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 NIPAL3Q6P499 406 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 CBLN3Q6UW01 205 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 RPTNQ6XPR3 784 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 ZNF595Q8IYB9 648 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 ZNF485Q8NCK3 441 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 OR4K13Q8NH42 304 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 BRIX1Q8TDN6 353 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 GAL3ST4Q96RP7 486 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 LMF2Q9BU23 707 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 FN3KQ9H479 309 aa9.78□□□□□ -0.84
CUX1-221ENST00000622516 EXOSC1Q9Y3B2 195 aaKnown RBP9.78□□□□□ -0.84
CUX1-221ENST00000622516 A0A1W2PQL4 384 aaPredicted RBP9.77□□□□□ -0.85
CUX1-221ENST00000622516 C4orf47A7E2U8 309 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 E9PI62 339 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 SLC30A4O14863 429 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 OIP5O43482 229 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 CHP2O43745 196 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 AK1P00568 194 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 EFNA3P52797 238 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 TAB1Q15750 504 aa9.77□□□□□ -0.85
CUX1-221ENST00000622516 MED25Q71SY5 747 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms