RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FGD2Q7Z6J4 655 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 VTCN1Q7Z7D3 282 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 OR6T1Q8NGN1 323 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 OR10Q1Q8NGQ4 319 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 PROX1Q92786 737 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 NSMCE2Q96MF7 247 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 PIGQQ9BRB3 760 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 ACER3Q9NUN7 267 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 TESQ9UGI8 421 aaKnown RBP17.84■□□□□ 0.45
UPF3A-211ENST00000618700 SLC7A8Q9UHI5 535 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 RPS6KA6Q9UK32 745 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 SAMD4AQ9UPU9 718 aaKnown RBP17.84■□□□□ 0.45
UPF3A-211ENST00000618700 OR2M5A3KFT3 312 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SHISA8B8ZZ34 492 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 AQP7O14520 342 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 FMO6PO60774 539 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 TNFRSF1BP20333 461 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 HTR2AP28223 471 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 EIF1P41567 113 aaKnown RBP17.83■□□□□ 0.44
UPF3A-211ENST00000618700 IDH2P48735 452 aaKnown RBP17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SESN3P58005 492 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 HSF1Q00613 529 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 TRAP1Q12931 704 aaKnown RBP17.83■□□□□ 0.44
UPF3A-211ENST00000618700 NHSL2Q5HYW2 709 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 RAET1LQ5VY80 246 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 ARHGAP11AQ6P4F7 1023 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 FAM86B1Q8N7N1 296 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 ST6GALNAC3Q8NDV1 305 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 TMEM234Q8WY98 164 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 LZICQ8WZA0 190 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 TPD52L3Q96J77 140 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 HSH2DQ96JZ2 352 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 MRGPRX4Q96LA9 322 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 LDAHQ9H6V9 325 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SPRR3Q9UBC9 169 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SLC9A8Q9Y2E8 581 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SLC6A5Q9Y345 797 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SH3GLB1Q9Y371 365 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF462Q96JM2 2506 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 SVILO95425 2214 aa17.83■□□□□ 0.44
UPF3A-211ENST00000618700 DNAJC13O75165 2243 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 TPST2O60704 377 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 CHMP24386 653 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 ELK4P28324 431 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 ADH6P28332 368 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 TLE1Q04724 770 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 MTX3Q5HYI7 312 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 CYP2R1Q6VVX0 501 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 PRICKLE2Q7Z3G6 844 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 RANBP3LQ86VV4 465 aaPredicted RBP17.82■□□□□ 0.44
UPF3A-211ENST00000618700 CARM1Q86X55 608 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 DHFR2Q86XF0 187 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 RBM45Q8IUH3 476 aaKnown RBP17.82■□□□□ 0.44
UPF3A-211ENST00000618700 LSMEM1Q8N8F7 131 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 OR5M1Q8NGP8 315 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF563Q8TA94 476 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 PHF10Q8WUB8 498 aaKnown RBP17.82■□□□□ 0.44
UPF3A-211ENST00000618700 GEMIN6Q8WXD5 167 aaKnown RBP17.82■□□□□ 0.44
UPF3A-211ENST00000618700 UTP4Q969X6 686 aaKnown RBP17.82■□□□□ 0.44
UPF3A-211ENST00000618700 MIB2Q96AX9 1013 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 SFXN2Q96NB2 322 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 POMPQ9Y244 141 aa17.82■□□□□ 0.44
UPF3A-211ENST00000618700 A0A1B0GTH9 108 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 TCRBV5S2A0A599 114 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 PRKD3O94806 890 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 GP1BBP13224 206 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 SLC1A3P43003 542 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 CRYZQ08257 329 aaKnown RBP17.81■□□□□ 0.44
UPF3A-211ENST00000618700 ZSCAN26Q16670 478 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 IFI44LQ53G44 452 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 DCST1Q5T197 706 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 WBP2NLQ6ICG8 309 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 AAGABQ6PD74 315 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 ENPP6Q6UWR7 440 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 PLEKHM3Q6ZWE6 761 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 GRINAQ7Z429 371 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF605Q86T29 641 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 VANGL1Q8TAA9 524 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-211ENST00000618700 ZNF559Q9BR84 538 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 UGT2B28Q9BY64 529 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 ADAM19Q9H013 955 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 SLC24A3Q9HC58 644 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 MED12Q93074 2177 aa17.81■□□□□ 0.44
UPF3A-211ENST00000618700 OR14I1A6ND48 311 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 LINC01387J3KSC0 135 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 ACTL6AO96019 429 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 SEMG1P04279 462 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 PLA2G2AP14555 144 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 BMP7P18075 431 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 OR1E2P47887 323 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 LHX2P50458 406 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 COPZ1P61923 177 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 KCNC4Q03721 635 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 VASNQ6EMK4 673 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 GFRALQ6UXV0 394 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 TSPYL5Q86VY4 417 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-211ENST00000618700 ABTB1Q969K4 478 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-211ENST00000618700 C3orf49Q96BT1 292 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 PYURFQ96I23 114 aa17.8■□□□□ 0.44
UPF3A-211ENST00000618700 MCHR1Q99705 422 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms