RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 FCARP24071 287 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 MAN2A2P49641 1150 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 CXCR4P61073 352 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 TLE3Q04726 772 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 FGL2Q14314 439 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 PRAMEF8Q5VWM4 474 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 PRAMEF7Q5VXH5 474 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 OR5M10Q6IEU7 315 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 OPN5Q6U736 354 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 UBE2Q1Q7Z7E8 422 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 STACQ99469 402 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 CABIN1Q9Y6J0 2220 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 A8MV72 311 aaPredicted RBP12.91□□□□□ -0.34
CIITA-213ENST00000618327 PSMD9O00233 223 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 DLGAP1O14490 977 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 IL33O95760 270 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 CHMP24386 653 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 GRPRP30550 384 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 SFTPDP35247 375 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 ACTA2P62736 377 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 ACTG2P63267 376 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 TSPAN31Q12999 210 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 Q6ZPB1 254 aaPredicted RBP12.91□□□□□ -0.34
CIITA-213ENST00000618327 ELMOD2Q8IZ81 293 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 CA13Q8N1Q1 262 aa12.91□□□□□ -0.34
CIITA-213ENST00000618327 MRPS14O60783 128 aaKnown RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 LCKP06239 509 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 TRHRP34981 398 aaPredicted RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 FAM76BQ5HYJ3 339 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 COL13A1Q5TAT6 717 aaPredicted RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 XKRXQ6PP77 449 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ZSCAN1Q8NBB4 408 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 OR7G2Q8NG99 324 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 THAP6Q8TBB0 222 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 WDR34Q96EX3 536 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 HIST1H2AAQ96QV6 131 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 OR2A14Q96R47 310 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ZNF69Q9UC07 566 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 SNX11Q9Y5W9 270 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 TRAV27A0A087WT01 109 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ANKRD28O15084 1053 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 NPR2P20594 1047 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 LSAMPQ13449 338 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 RUNX2Q13950 521 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 SMAD2Q15796 467 aaKnown RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 SGCAQ16586 387 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ZNF782Q6ZMW2 699 aaPredicted RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 B3GNT7Q8NFL0 401 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 OR5J2Q8NH18 312 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 NEIL3Q8TAT5 605 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 RPH3AQ9Y2J0 694 aaPredicted RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 OR2A25A4D2G3 310 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 M0R233 179 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ARFRP1Q13795 201 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 FAM53BQ14153 422 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ELAVL1Q15717 326 aaKnown RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 GRK1Q15835 563 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 ZNF791Q3KP31 576 aaPredicted RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 PLAG1Q6DJT9 500 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 RNF113BQ8IZP6 322 aaKnown RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 NT5CQ8TCD5 201 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 THRSPQ92748 146 aa12.9□□□□□ -0.34
CIITA-213ENST00000618327 PAK1IP1Q9NWT1 392 aaPredicted RBP12.9□□□□□ -0.34
CIITA-213ENST00000618327 A0A0A6YYD5 115 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 S1PR1P21453 382 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 CRHBPP24387 322 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 HTR3AP46098 478 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ZNF84P51523 738 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ARF1P84077 181 aaKnown RBP12.89□□□□□ -0.35
CIITA-213ENST00000618327 TBPL2Q6SJ96 375 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 SNX29P2Q8IUI4 249 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ZFP41Q8N8Y5 198 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 TMIGD2Q96BF3 282 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 EBF1Q9UH73 591 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 PADI1Q9ULC6 663 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 H0YIG0 161 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 FARS2O95363 451 aaKnown RBP12.89□□□□□ -0.35
CIITA-213ENST00000618327 CSN2P05814 226 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 PGAM2P15259 253 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ZNF28P17035 718 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 SOX2P48431 317 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 IGFN1Q86VF2 1251 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 NLGN4XQ8N0W4 816 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 SPARTQ8N0X7 666 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 CNRIP1Q96F85 164 aaPredicted RBP12.89□□□□□ -0.35
CIITA-213ENST00000618327 WASHC1A8K0Z3 465 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 C12orf71A8MTZ7 269 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ALOX12BO75342 701 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 WISP3O95389 354 aaPredicted RBP12.89□□□□□ -0.35
CIITA-213ENST00000618327 H2BFMP0C1H6 154 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ZNF43P17038 809 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 VAMP1P23763 118 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ELAVL4P26378 380 aaKnown RBP12.89□□□□□ -0.35
CIITA-213ENST00000618327 LCN1P31025 176 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 ACVR1BP36896 505 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 EPHA4P54764 986 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 HNRNPA0Q13151 305 aaKnown RBP12.89□□□□□ -0.35
CIITA-213ENST00000618327 TRAM1Q15629 374 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 PGGHGQ32M88 737 aa12.89□□□□□ -0.35
CIITA-213ENST00000618327 NHSL2Q5HYW2 709 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms