RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 TRIM64BA6NI03 449 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 DUXAA6NLW8 204 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 E9PBE3 544 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 NDUFAB1O14561 156 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 NR1H2P55055 460 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 SPANXN4Q5MJ08 99 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 ZNF704Q6ZNC4 412 aaPredicted RBP16.92■□□□□ 0.3
CDX1-202ENST00000616154 BEND4Q6ZU67 534 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 C6orf120Q7Z4R8 191 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 VPS37AQ8NEZ2 397 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 OR5AK3PQ8NH89 298 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 POC1BQ8TC44 478 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 OIT3Q8WWZ8 545 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 TEX37Q96LM6 180 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 CCDC115Q96NT0 180 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 SDF2Q99470 211 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 NMUR2Q9GZQ4 415 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 OR10A4Q9H209 315 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 BTNL2Q9UIR0 455 aa16.92■□□□□ 0.3
CDX1-202ENST00000616154 A0A0J9YW62 118 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 TNFSF11O14788 317 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 SMAD7O15105 426 aaKnown RBP16.91■□□□□ 0.3
CDX1-202ENST00000616154 UBDO15205 165 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 TMCC2O75069 709 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 OPN1LWP04000 364 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 HPGDP15428 266 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 ATP6V1C1P21283 382 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 ME2P23368 584 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 ATP4BP51164 291 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 ATP12AP54707 1039 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 SUMO3P55854 103 aaPredicted RBP16.91■□□□□ 0.3
CDX1-202ENST00000616154 SF3A3Q12874 501 aaKnown RBP eCLIP16.91■□□□□ 0.3
CDX1-202ENST00000616154 GSTA3Q16772 222 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.91■□□□□ 0.3
CDX1-202ENST00000616154 PDSS1Q5T2R2 415 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 SAXO2Q658L1 398 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 HBMQ6B0K9 141 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 NXNQ6DKJ4 435 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 HEPHL1Q6MZM0 1159 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 STK32CQ86UX6 486 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 ZNF527Q8NB42 609 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 OR5D16Q8NGK9 328 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 B4GALNT2Q8NHY0 566 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 SH3YL1Q96HL8 342 aaPredicted RBP16.91■□□□□ 0.3
CDX1-202ENST00000616154 ACTR6Q9GZN1 396 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 ZNF350Q9GZX5 532 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 SDR39U1Q9NRG7 319 aaPredicted RBP16.91■□□□□ 0.3
CDX1-202ENST00000616154 PCDHGB4Q9UN71 923 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 TRIM33Q9UPN9 1127 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 GPR52Q9Y2T5 361 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 FREM1Q5H8C1 2179 aa16.91■□□□□ 0.3
CDX1-202ENST00000616154 NUP214P35658 2090 aaPredicted RBP16.9■□□□□ 0.3
CDX1-202ENST00000616154 ETV2O00321 342 aaPredicted RBP16.9■□□□□ 0.3
CDX1-202ENST00000616154 LINGO3P0C6S8 592 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 IDO1P14902 403 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 PSMB1P20618 241 aaKnown RBP16.9■□□□□ 0.3
CDX1-202ENST00000616154 UQCRC2P22695 453 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 IL12AP29459 219 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 AGTR1P30556 359 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 SOAT1P35610 550 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 LRRC74AQ0VAA2 488 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 FAM174BQ3ZCQ3 159 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 GLB1L3Q8NCI6 653 aaPredicted RBP16.9■□□□□ 0.3
CDX1-202ENST00000616154 CCDC197Q8NCU1 140 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 OR4A15Q8NGL6 344 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 TMEM171Q8WVE6 324 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 NEURL3Q96EH8 262 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 KLHL15Q96M94 604 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 KLHDC3Q9BQ90 382 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 TMEM204Q9BSN7 226 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 MYLK2Q9H1R3 596 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 TMEM185BQ9H7F4 350 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 ZNF701Q9NV72 531 aaPredicted RBP16.9■□□□□ 0.3
CDX1-202ENST00000616154 TMEM45AQ9NWC5 275 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 ICAM5Q9UMF0 924 aa16.9■□□□□ 0.3
CDX1-202ENST00000616154 DNAJA2O60884 412 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 CNOT4O95628 575 aaKnown RBP16.89■□□□□ 0.29
CDX1-202ENST00000616154 AGR2O95994 175 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 PABPC4LP0CB38 370 aaKnown RBP16.89■□□□□ 0.29
CDX1-202ENST00000616154 NID1P14543 1247 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 MATN1P21941 496 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 ELK4P28324 431 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 S100A3P33764 101 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 EIF1P41567 113 aaKnown RBP16.89■□□□□ 0.29
CDX1-202ENST00000616154 UFM1P61960 85 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 RPS26P62854 115 aaKnown RBP16.89■□□□□ 0.29
CDX1-202ENST00000616154 ZNF117Q03924 483 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 ZNF141Q15928 474 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 ARHGAP11BQ3KRB8 267 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 PDCD4Q53EL6 469 aaKnown RBP16.89■□□□□ 0.29
CDX1-202ENST00000616154 GTF2IRD2BQ6EKJ0 949 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 GTF2IRD2Q86UP8 949 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 ANKRD46Q86W74 232 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 WFDC8Q8IUA0 241 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 ZNF611Q8N823 705 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 OSTF1Q92882 214 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 PLPPR2Q96GM1 343 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 SLC35G5Q96KT7 338 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 CXorf56Q9H5V9 222 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 SAR1AQ9NR31 198 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms