RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 EXO5Q9H790 373 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 PPP1R3EQ9H7J1 279 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 AUNIPQ9H7T9 357 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 U3KQ87 197 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 SEC16AO15027 2179 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 CHD5Q8TDI0 1954 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 E9PI62 339 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 SEMA7AO75326 666 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 RP2O75695 350 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 CTSAP10619 480 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 HOXB3P14651 431 aaPredicted RBP11.72□□□□□ -0.53
LIG1-221ENST00000613670 PER3P56645 1201 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 REEP5Q00765 189 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 FOXK2Q01167 660 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ZNF234Q14588 700 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 OPCMLQ14982 345 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 TRAM1Q15629 374 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 HNRNPA1L2Q32P51 320 aaKnown RBP11.72□□□□□ -0.53
LIG1-221ENST00000613670 ZNF547Q8IVP9 402 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 SAMD14Q8IZD0 417 aaPredicted RBP11.72□□□□□ -0.53
LIG1-221ENST00000613670 SLAIN1Q8ND83 568 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 OR56B4Q8NH76 319 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ADAMTS14Q8WXS8 1223 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 NXPE3Q969Y0 559 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 TESQ9UGI8 421 aaKnown RBP11.72□□□□□ -0.53
LIG1-221ENST00000613670 SCP2D1Q9UJQ7 156 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 HCFC2Q9Y5Z7 792 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ANKRD36A6QL64 1941 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 SIX6O95475 246 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 EPHA5P54756 1037 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ACTC1P68032 377 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ACTA1P68133 377 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 SCGB2B2Q4G0G5 96 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 ZNF627Q7L945 461 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 DUSP18Q8NEJ0 188 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 TEAD3Q99594 435 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 C1QTNF6Q9BXI9 259 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 C1QTNF7Q9BXJ2 289 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 CERS4Q9HA82 394 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 NOX3Q9HBY0 568 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 KLHL9Q9P2J3 617 aa11.72□□□□□ -0.53
LIG1-221ENST00000613670 OR6C74A6NCV1 312 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 PEX14O75381 377 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 UBL3O95164 117 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 EPCAMP16422 314 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 GRK6P43250 576 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 FBXW4P57775 412 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 ARHGAP19Q14CB8 494 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 ASPGQ86U10 573 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 ZNF563Q8TA94 476 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 MS4A4EQ96PG1 132 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 CNN2Q99439 309 aaKnown RBP11.71□□□□□ -0.53
LIG1-221ENST00000613670 OR52A5Q9H2C5 316 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 SLC38A1Q9H2H9 487 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 EMC7Q9NPA0 242 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 DICER1Q9UPY3 1922 aaKnown RBP11.71□□□□□ -0.53
LIG1-221ENST00000613670 B4GALT2O60909 372 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 RBBP9O75884 186 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 PTHLHP12272 177 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 DECR1Q16698 335 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 ABHD17CQ6PCB6 329 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 ZNF793Q6ZN11 406 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 KCTD12Q96CX2 325 aaKnown RBP11.71□□□□□ -0.53
LIG1-221ENST00000613670 SLC35A4Q96G79 324 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 PRDM9Q9NQV7 894 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 CBLCQ9ULV8 474 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 SLC35A3Q9Y2D2 325 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 OTOFQ9HC10 1997 aa11.71□□□□□ -0.53
LIG1-221ENST00000613670 GXYLT2A0PJZ3 443 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 MAN2B1O00754 1011 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 UCHL1P09936 223 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 GTF2F2P13984 249 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 PSMB1P20618 241 aaKnown RBP11.71□□□□□ -0.54
LIG1-221ENST00000613670 KIAA1324Q6UXG2 1013 aaKnown RBP11.71□□□□□ -0.54
LIG1-221ENST00000613670 ZDHHC1Q8WTX9 485 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 GSX2Q9BZM3 304 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 CYSLTR2Q9NS75 346 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 FBXL4Q9UKA2 621 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 NUP50Q9UKX7 468 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 COPS3Q9UNS2 423 aa11.71□□□□□ -0.54
LIG1-221ENST00000613670 LEUTXA8MZ59 168 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SGK494L7N484 410 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 FGF19O95750 216 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 NPR2P20594 1047 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SOX9P48436 509 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 PTH2RP49190 550 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SHC2P98077 582 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 CD276Q5ZPR3 534 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 ELP2Q6IA86 826 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 COMTD1Q86VU5 262 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 MORN4Q8NDC4 146 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 CAPNS2Q96L46 248 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SFXN2Q96NB2 322 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 ORAI3Q9BRQ5 295 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 EPHX3Q9H6B9 360 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 FBXL3Q9UKT7 428 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 FARSAQ9Y285 508 aaKnown RBP11.7□□□□□ -0.54
LIG1-221ENST00000613670 SCN10AQ9Y5Y9 1956 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 PRRT4C9JH25 899 aa11.7□□□□□ -0.54
LIG1-221ENST00000613670 SYT5O00445 386 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms