RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	ZNF721	Q8TF20	911 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	FGF11	Q92914	225 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	SLC46A1	Q96NT5	459 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	OPALIN	Q96PE5	141 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	OR5M11	Q96RB7	305 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	CHCHD6	Q9BRQ6	235 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	CENPO	Q9BU64	300 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	C6orf62	Q9GZU0	229 aa	Predicted RBP	10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	COPS7A	Q9UBW8	275 aa		10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	PAIP2B	Q9ULR5	123 aa	Known RBP	10.78	□□□□□ -0.68
VRK3-223	ENST00000601341	LOC100506127	A0A0U1RQW1	187 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	SLC35F4	A4IF30	521 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	CLPS	P04118	112 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	CHRM4	P08173	479 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	GAA	P10253	952 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	POU1F1	P28069	291 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	PRKAR1B	P31321	381 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	POU6F2	P78424	691 aa	Predicted RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	PSG6	Q00889	435 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	RAB40B	Q12829	278 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	SSX1	Q16384	188 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	TST	Q16762	297 aa	Known RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	KIF26B	Q2KJY2	2108 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	PODNL1	Q6PEZ8	512 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	TIPARP	Q7Z3E1	657 aa	Known RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	CPEB2	Q7Z5Q1	589 aa	Known RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	ZER1	Q7Z7L7	766 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	PARP16	Q8N5Y8	322 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	ESX1	Q8N693	406 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	OR4K5	Q8NGD3	323 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	OR4D11	Q8NGI4	311 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	OR1N1	Q8NGS0	311 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	OR2Y1	Q8NGV0	311 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	SETD6	Q8TBK2	473 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	WDFY2	Q96P53	400 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	SDF2	Q99470	211 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	ARHGDIG	Q99819	225 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	POLR2J2	Q9GZM3	115 aa	Known RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	SLC38A1	Q9H2H9	487 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	HHATL	Q9HCP6	504 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341		Q9N2J8	555 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	MAN2C1	Q9NTJ4	1040 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	FOXJ2	Q9P0K8	574 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	TES	Q9UGI8	421 aa	Known RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	STUB1	Q9UNE7	303 aa		10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	PTRH2	Q9Y3E5	179 aa	Known RBP	10.77	□□□□□ -0.68
VRK3-223	ENST00000601341	PTPRZ1	P23471	2315 aa	Predicted RBP	10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	NIN	Q8N4C6	2090 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	TMEM129	A0AVI4	362 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	OR6C76	A6NM76	312 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	ZNF670-ZNF695	F2Z2N8	137 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	GFRA3	O60609	400 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	STX11	O75558	287 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	KLF7	O75840	302 aa	Predicted RBP	10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	RAB36	O95755	333 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	RAB40AL	P0C0E4	278 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	HSMCR30	P0CW71	290 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	FUT4	P22083	530 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	MMP11	P24347	488 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	CBX3	Q13185	183 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	TRAM2	Q15035	370 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	DCST2	Q5T1A1	773 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	SLC22A16	Q86VW1	577 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	CADM3	Q8N126	398 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	CYP4Z2P	Q8N1L4	340 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	ZNF321P	Q8N8H1	164 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	GNPDA2	Q8TDQ7	276 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	ADAMTS14	Q8WXS8	1223 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	IL4I1	Q96RQ9	567 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	LPAR4	Q99677	370 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	NUDT9	Q9BW91	350 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	TSSK6	Q9BXA6	273 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	NUAK2	Q9H093	628 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	MTHFD2L	Q9H903	347 aa	Predicted RBP	10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	FGF20	Q9NP95	211 aa	Predicted RBP	10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	POLE3	Q9NRF9	147 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	MED17	Q9NVC6	651 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	CDV3	Q9UKY7	258 aa	Known RBP	10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	DTX4	Q9Y2E6	619 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	WDR45	Q9Y484	360 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	NUP210L	Q5VU65	1888 aa		10.77	□□□□□ -0.69
VRK3-223	ENST00000601341	IGHV3-20	A0A0C4DH32	117 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	IQCM	A0A1B0GVH7	501 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	MYL12B	O14950	172 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	PRODH	O43272	600 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	FCMR	O60667	390 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	IL1A	P01583	271 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	UMOD	P07911	640 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	CT45A8	P0DMV1	189 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	CT45A9	P0DMV2	189 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	TCN2	P20062	427 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	TRHR	P34981	398 aa	Predicted RBP	10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	TGFBR1	P36897	503 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	FOLR3	P41439	243 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	PPIC	P45877	212 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	RORC	P51449	518 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	DCAF7	P61962	342 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	CHRNE	Q04844	493 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	ST3GAL3	Q11203	375 aa		10.76	□□□□□ -0.69
VRK3-223	ENST00000601341	TSPAN31	Q12999	210 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms