RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 DIO2Q92813 273 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 AMBRA1Q9C0C7 1298 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 YY1AP1Q9H869 796 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 IL1RAPQ9NPH3 570 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 NPDC1Q9NQX5 325 aaPredicted RBP11.53□□□□□ -0.56
UPF1-208ENST00000600012 RLIMQ9NVW2 624 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 HPF1Q9NWY4 346 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 VNN3Q9NY84 501 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 MRTO4Q9UKD2 239 aaKnown RBP11.53□□□□□ -0.56
UPF1-208ENST00000600012 IFT52Q9Y366 437 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 PCNX3Q9H6A9 2034 aa11.53□□□□□ -0.56
UPF1-208ENST00000600012 NKX2-6A6NCS4 301 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 SAC3D1A6NKF1 404 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 NPIPB9F8W1W9 429 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 J3KTA2 159 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 SYT5O00445 386 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ICOSLGO75144 302 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 UGT2B11O75310 529 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 BCAS1O75363 584 aaPredicted RBP11.52□□□□□ -0.57
UPF1-208ENST00000600012 OR2J2O76002 312 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 UTS2O95399 124 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 LGI1O95970 557 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 CST1P01037 141 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 IFNW1P05000 195 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 NID1P14543 1247 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 PEX2P28328 305 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 MSX1P28360 303 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ATP12AP54707 1039 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 PSMD4P55036 377 aaKnown RBP11.52□□□□□ -0.57
UPF1-208ENST00000600012 NRG3P56975 720 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 PPIAP62937 165 aaKnown RBP11.52□□□□□ -0.57
UPF1-208ENST00000600012 PLGLB1Q02325 96 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 PLAURQ03405 335 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 LARS2Q15031 903 aaKnown RBP11.52□□□□□ -0.57
UPF1-208ENST00000600012 NPTX1Q15818 432 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ZNF141Q15928 474 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 NRF1Q16656 503 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 EMC4Q5J8M3 183 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 RNF220Q5VTB9 566 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 DEF8Q6ZN54 512 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 DMRTC2Q8IXT2 367 aaPredicted RBP11.52□□□□□ -0.57
UPF1-208ENST00000600012 TAGAPQ8N103 731 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 CLIP4Q8N3C7 705 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ICA1LQ8NDH6 482 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 OR2M7Q8NG81 312 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 OR5M3Q8NGP4 307 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 OR4C3Q8NH37 302 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 NRG4Q8WWG1 115 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ASB15Q8WXK1 588 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ARHGDIGQ99819 225 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ZNF559Q9BR84 538 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 UCK2Q9BZX2 261 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 DEFB127Q9H1M4 99 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ZDHHC11Q9H8X9 412 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 SLC24A3Q9HC58 644 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 DEPPQ9NTK1 212 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 NDUFAF4Q9P032 175 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 MYOTQ9UBF9 498 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 STOML1Q9UBI4 398 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 TNFRSF10DQ9UBN6 386 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 KCNN3Q9UGI6 736 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 SLC13A4Q9UKG4 626 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 ZNF232Q9UNY5 417 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 NPFFR2Q9Y5X5 522 aa11.52□□□□□ -0.57
UPF1-208ENST00000600012 AKAP6Q13023 2319 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 OR14I1A6ND48 311 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 GNGT2O14610 69 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 CASQ2O14958 399 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 CLOCKO15516 846 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 ABCB7O75027 752 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 DEAF1O75398 565 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 PPM1BO75688 479 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 OXSR1O95747 527 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 HOXD4P09016 255 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 HOXB6P17509 224 aaKnown RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 PTDSS1P48651 473 aaKnown RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 IST1P53990 364 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 PNLIPRP2P54317 469 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 NUP107P57740 925 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 RGS8P57771 180 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 PMPCAQ10713 525 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 PPP1R8Q12972 351 aaKnown RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 FGFBP1Q14512 234 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 LRRC36Q1X8D7 754 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 EIPR1Q53HC9 387 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 AP1ARQ63HQ0 302 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 LYPD8Q6UX82 237 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 PIWIL3Q7Z3Z3 882 aaKnown RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 SLC22A16Q86VW1 577 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 CCDC71Q8IV32 467 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 RPRMLQ8N4K4 120 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 GATSQ8NAP1 163 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 OR6T1Q8NGN1 323 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 SLC22A8Q8TCC7 542 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 PMM1Q92871 262 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 ARSGQ96EG1 525 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 ZNF300Q96RE9 604 aaPredicted RBP11.51□□□□□ -0.57
UPF1-208ENST00000600012 RASL10BQ96S79 203 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 RASSF4Q9H2L5 321 aa11.51□□□□□ -0.57
UPF1-208ENST00000600012 CTPS2Q9NRF8 586 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms