RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ATAD3AQ9NVI7 634 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 GIN1Q9NXP7 522 aa11.11□□□□□ -0.63
TRIM28-212ENST00000597995 NOP53Q9NZM5 478 aaKnown RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 MAGED1Q9Y5V3 778 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-212ENST00000597995 TMEM120BA0PK00 339 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 DPRXA6NFQ7 191 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 RNF212BA8MTL3 300 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 NPIPB9F8W1W9 429 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF195O14628 629 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 OIP5O43482 229 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 EFNA2O43921 213 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 ADAP00813 363 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 IGHV4-39P01824 125 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 DDX5P17844 614 aaKnown RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 SHC1P29353 583 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 SFTPDP35247 375 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 CDKN1AP38936 164 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 RNF144AP50876 292 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 SUMO3P55854 103 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 RPS26P62854 115 aaKnown RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 MAD2L1Q13257 205 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 TP53BP2Q13625 1128 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 TSC22D1Q15714 1073 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 PGS1Q32NB8 556 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 LSM12Q3MHD2 195 aaKnown RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 SEZ6L2Q6UXD5 910 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 FCRLAQ7L513 359 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 NATD1Q8N6N6 113 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 ANKRD42Q8N9B4 389 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 OR56A1Q8NGH5 318 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 OR5D16Q8NGK9 328 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 SFXN5Q8TD22 340 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 NEUROG1Q92886 237 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 TEX37Q96LM6 180 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 PAIP2Q9BPZ3 127 aaKnown RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 ACTRT3Q9BYD9 372 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 SRXN1Q9BYN0 137 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 TRIM2Q9C040 744 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 MEAF6Q9HAF1 191 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 YAE1D1Q9NRH1 226 aa11.1□□□□□ -0.63
TRIM28-212ENST00000597995 GPC6Q9Y625 555 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF814B7Z6K7 855 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 SDHDO14521 159 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 SNNO75324 88 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 SNUPNO95149 360 aaKnown RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 CD8AP01732 235 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 C1QCP02747 245 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 ALDOCP09972 364 aaKnown RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 P2RX1P51575 399 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF117Q03924 483 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 BSPH1Q075Z2 132 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 FOXF1Q12946 379 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 NRF1Q16656 503 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 TMEM176BQ3YBM2 270 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 KLHL26Q53HC5 615 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 DCST2Q5T1A1 773 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 CBLN3Q6UW01 205 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 Q6ZT83 130 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 BHLHA15Q7RTS1 189 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 OLIG3Q7RTU3 272 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 CROCCP2Q86T23 111 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 DTX2Q86UW9 622 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 ZNF527Q8NB42 609 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 KBTBD8Q8NFY9 601 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 OR8J2Q8NGG1 315 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 FBXO27Q8NI29 283 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 NANOS1Q8WY41 292 aaKnown RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 TMEM158Q8WZ71 300 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 TLCD1Q96CP7 247 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 HS6ST2Q96MM7 605 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 OR7D2Q96RA2 312 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 PRPF18Q99633 342 aaKnown RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 TRAF4Q9BUZ4 470 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 HOXD1Q9GZZ0 328 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 ALG2Q9H553 416 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 BCO1Q9HAY6 547 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 FAIMQ9NVQ4 179 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 CISD1Q9NZ45 108 aaKnown RBP11.09□□□□□ -0.63
TRIM28-212ENST00000597995 KLHL9Q9P2J3 617 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 ICAM5Q9UMF0 924 aa11.09□□□□□ -0.63
TRIM28-212ENST00000597995 CENPVL1A0A0U1RR11 272 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 A8MV72 311 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-212ENST00000597995 H3BNH8 94 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 RNASET2O00584 256 aaKnown RBP11.08□□□□□ -0.64
TRIM28-212ENST00000597995 CFLARO15519 480 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 ADAM11O75078 769 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 NTN1O95631 604 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 NUDT14O95848 222 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 LBPP18428 481 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 ATP6V1C1P21283 382 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 IL12AP29459 219 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 OR3A2P47893 321 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 RAC3P60763 192 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 MAGOHP61326 146 aaKnown RBP11.08□□□□□ -0.64
TRIM28-212ENST00000597995 FAPQ12884 760 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 NDUFAF6Q330K2 333 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 CHRFAM7AQ494W8 412 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 SPDYE7PQ495Y7 208 aa11.08□□□□□ -0.64
TRIM28-212ENST00000597995 SLC25A53Q5H9E4 307 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms