RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 FAM162AQ96A26 154 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 TIMP4Q99727 224 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 NPAS1Q99742 590 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 ARHGDIGQ99819 225 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 BTBD10Q9BSF8 475 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 ADPRHL2Q9NX46 363 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 TNFRSF10DQ9UBN6 386 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 TESQ9UGI8 421 aaKnown RBP12.98□□□□□ -0.33
VRK3-213ENST00000597215 OSGIN2Q9Y236 505 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 SLC9A8Q9Y2E8 581 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 ZNF337Q9Y3M9 751 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 AP4B1Q9Y6B7 739 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 POLEQ07864 2286 aa12.98□□□□□ -0.33
VRK3-213ENST00000597215 FIGNL2A6NMB9 653 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 J3QKU1 62 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 STSP08842 583 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 PRG2P13727 222 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 CPN1P15169 458 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 NCK1P16333 377 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 PSMA4P25789 261 aaKnown RBP12.97□□□□□ -0.33
VRK3-213ENST00000597215 SLC1A3P43003 542 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 HTR3AP46098 478 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 LHX2P50458 406 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 MERTKQ12866 999 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 SELENBP1Q13228 472 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 NRF1Q16656 503 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 GXYLT1Q4G148 440 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 DCST1Q5T197 706 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 GLYATQ6IB77 296 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 PLEKHM3Q6ZWE6 761 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 GRINAQ7Z429 371 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 RANBP3LQ86VV4 465 aaPredicted RBP12.97□□□□□ -0.33
VRK3-213ENST00000597215 CADM2Q8N3J6 435 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 OR5M9Q8NGP3 310 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 SMPDL3BQ92485 455 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 ZNF524Q96C55 264 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 SLC7A6OSQ96CW6 309 aaPredicted RBP12.97□□□□□ -0.33
VRK3-213ENST00000597215 THTPAQ9BU02 230 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 PRDM14Q9GZV8 571 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 PNPLA3Q9NST1 481 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 RPS6KA6Q9UK32 745 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 CAMK2AQ9UQM7 478 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 SNX13Q9Y5W8 968 aa12.97□□□□□ -0.33
VRK3-213ENST00000597215 TRGV8A0A0C4DH27 118 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 H0Y3Z8 333 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 M0R3H8 397 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 EBAG9O00559 213 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 WDR1O75083 606 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 PDE5AO76074 875 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 SERPINA1P01009 418 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 GABRA1P14867 456 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 ZNF708P17019 499 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 APOBEC1P41238 236 aaKnown RBP12.96□□□□□ -0.33
VRK3-213ENST00000597215 CA7P43166 264 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 STARP49675 285 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 POLR2HP52434 150 aaKnown RBP12.96□□□□□ -0.33
VRK3-213ENST00000597215 ZNF136P52737 540 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 RAC1P63000 192 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 SELENOWP63302 87 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 HOXC5Q00444 222 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 C3AR1Q16581 482 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 EIF2S3LQ2VIR3 472 aaKnown RBP12.96□□□□□ -0.33
VRK3-213ENST00000597215 WBP2NLQ6ICG8 309 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 C3orf33Q6P1S2 294 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 CCDC121Q6ZUS5 278 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 CBLL1Q75N03 491 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 DOLPP1Q86YN1 238 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 EID3Q8N140 333 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 MEIOBQ8N635 442 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 PRR7Q8TB68 274 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 WDYHV1Q96HA8 205 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 TPD52L3Q96J77 140 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 ZNF559Q9BR84 538 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 TRIM2Q9C040 744 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 TP63Q9H3D4 680 aaPredicted RBP12.96□□□□□ -0.33
VRK3-213ENST00000597215 MUC13Q9H3R2 512 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 GORASP2Q9H8Y8 452 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 SERINC1Q9NRX5 453 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.96□□□□□ -0.33
VRK3-213ENST00000597215 RPS6KB2Q9UBS0 482 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 TINAGQ9UJW2 476 aa12.96□□□□□ -0.33
VRK3-213ENST00000597215 GJE1A6NN92 205 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 AHRRA9YTQ3 701 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 PYCARD-AS1I3L0S3 204 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 ARPC2O15144 300 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 FMO6PO60774 539 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 DNAJC8O75937 253 aaPredicted RBP12.95□□□□□ -0.34
VRK3-213ENST00000597215 ZNF682O95780 498 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 HOXD4P09016 255 aaPredicted RBP12.95□□□□□ -0.34
VRK3-213ENST00000597215 PTGER4P35408 488 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 MSX2P35548 267 aaPredicted RBP12.95□□□□□ -0.34
VRK3-213ENST00000597215 CLDN18P56856 261 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 SRYQ05066 204 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 SF3B4Q15427 424 aaKnown RBP eCLIP12.95□□□□□ -0.34
VRK3-213ENST00000597215 EMC4Q5J8M3 183 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 ZNF585AQ6P3V2 769 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 POMZP3Q6PJE2 187 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 CARM1Q86X55 608 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 ULK2Q8IYT8 1036 aa12.95□□□□□ -0.34
VRK3-213ENST00000597215 UBQLNLQ8IYU4 475 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms