RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 DEFB113Q30KQ7 82 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 TMEM176BQ3YBM2 270 aaPredicted RBP11.63□□□□□ -0.55
LIG1-212ENST00000596549 TIGD2Q4W5G0 525 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 PDCD4Q53EL6 469 aaKnown RBP11.63□□□□□ -0.55
LIG1-212ENST00000596549 COX20Q5RI15 118 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 PDSS1Q5T2R2 415 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 ATAD3BQ5T9A4 648 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 AP1ARQ63HQ0 302 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 ATG16L1Q676U5 607 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 TFAP2EQ6VUC0 442 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 NUFIP2Q7Z417 695 aaKnown RBP11.63□□□□□ -0.55
LIG1-212ENST00000596549 TGIF2LYQ8IUE0 185 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 ANKFN1Q8N957 763 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 VPS37AQ8NEZ2 397 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 OR9I1Q8NGQ6 314 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 PNPT1Q8TCS8 783 aaKnown RBP11.63□□□□□ -0.55
LIG1-212ENST00000596549 ST8SIA1Q92185 356 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 ARL8AQ96BM9 186 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 PIK3IP1Q96FE7 263 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 ZC3HAV1LQ96H79 300 aaKnown RBP11.63□□□□□ -0.55
LIG1-212ENST00000596549 OR52B2Q96RD2 323 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 PSD2Q9BQI7 771 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 SLC39A3Q9BRY0 314 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 TMUB1Q9BVT8 246 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 KLHL4Q9C0H6 718 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 SLC38A1Q9H2H9 487 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 MANSC1Q9H8J5 431 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 POLE3Q9NRF9 147 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 GLRX2Q9NS18 164 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 VPS13CQ709C8 3753 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 ITPR3Q14573 2671 aa11.63□□□□□ -0.55
LIG1-212ENST00000596549 GJE1A6NN92 205 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 KLF11O14901 512 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 CASKO14936 926 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 GCM2O75603 506 aaPredicted RBP11.62□□□□□ -0.55
LIG1-212ENST00000596549 RPS4Y1P22090 263 aaKnown RBP11.62□□□□□ -0.55
LIG1-212ENST00000596549 ENPP1P22413 925 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 EDNRAP25101 427 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 FOXD4Q12950 439 aaPredicted RBP11.62□□□□□ -0.55
LIG1-212ENST00000596549 GTDC1Q4AE62 458 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 GPAT3Q53EU6 434 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 PLEKHM3Q6ZWE6 761 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 FCRLAQ7L513 359 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 TUSC5Q8IXB3 177 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 PIWIL2Q8TC59 973 aaKnown RBP11.62□□□□□ -0.55
LIG1-212ENST00000596549 OIT3Q8WWZ8 545 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 OR52E6Q96RD3 313 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 NKIRAS1Q9NYS0 192 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 ZNF226Q9NYT6 803 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 SLC35A3Q9Y2D2 325 aa11.62□□□□□ -0.55
LIG1-212ENST00000596549 DSCAMO60469 2012 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 UQCRHLA0A096LP55 91 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 SLCO1B7G3V0H7 640 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 AP3D1O14617 1153 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 IDO1P14902 403 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 PGCP20142 388 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 SLC7A1P30825 629 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 ADAM8P78325 824 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 HPCAP84074 193 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 RNPS1Q15287 305 aaKnown RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 SYT14P1Q58G82 188 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 AGBL2Q5U5Z8 902 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 NXNQ6DKJ4 435 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 ABLIM2Q6H8Q1 611 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 EIF3MQ7L2H7 374 aaKnown RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 CXorf67Q86X51 503 aaPredicted RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 GABRG1Q8N1C3 465 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 GLB1L3Q8NCI6 653 aaPredicted RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 OR5B2Q96R09 309 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 ZNF300Q96RE9 604 aaPredicted RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 CCDC106Q9BWC9 280 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 ACTR6Q9GZN1 396 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 BCO1Q9HAY6 547 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 EXOSC3Q9NQT5 275 aaKnown RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 DLL4Q9NR61 685 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 CTPS2Q9NRF8 586 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 SDR39U1Q9NRG7 319 aaPredicted RBP11.61□□□□□ -0.55
LIG1-212ENST00000596549 ACER3Q9NUN7 267 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 PRR14LQ5THK1 2151 aa11.61□□□□□ -0.55
LIG1-212ENST00000596549 DSPPQ9NZW4 1301 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 RFXANKO14593 260 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 KLF4O43474 513 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 FESP07332 822 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 HOXB9P17482 250 aaPredicted RBP11.6□□□□□ -0.55
LIG1-212ENST00000596549 PSMB1P20618 241 aaKnown RBP11.6□□□□□ -0.55
LIG1-212ENST00000596549 DIO1P49895 249 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 RAC3P60763 192 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 MERTKQ12866 999 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TSC22D1Q15714 1073 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TTMPQ5BVD1 217 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TMEM201Q5SNT2 666 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 LRRC74BQ6ZQY2 392 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 ZNF621Q6ZSS3 439 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 BEND4Q6ZU67 534 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TRIML2Q8N7C3 387 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 WFDC11Q8NEX6 87 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TMEM234Q8WY98 164 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 CNOT9Q92600 299 aaKnown RBP11.6□□□□□ -0.55
LIG1-212ENST00000596549 ZNF75CPQ92670 426 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms