RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 CDH11P55287 796 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 C21orf58P58505 322 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 CSNK2A1P68400 391 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 LOXL1Q08397 574 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 TP53BP2Q13625 1128 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 STK11Q15831 433 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 UGT3A2Q3SY77 523 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ELOA3BQ3SY89 546 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 FAM153CQ494X1 144 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 C1QTNF12Q5T7M4 302 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 TMPPEQ6ZT21 453 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ATG4DQ86TL0 474 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 C10orf107Q8IVU9 208 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 PHC2Q8IXK0 858 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ZNF100Q8IYN0 542 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ZNF433Q8N7K0 673 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 ATP6V1C2Q8NEY4 427 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ELOA3Q8NG57 546 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 TWIST2Q8WVJ9 160 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 OIT3Q8WWZ8 545 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 TMEM234Q8WY98 164 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ZNF75CPQ92670 426 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 COQ8BQ96D53 544 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 SDF2Q99470 211 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 DHRS9Q9BPW9 319 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 LAT2Q9GZY6 243 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 ANKZF1Q9H8Y5 726 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 CBLN4Q9NTU7 201 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 EMC3Q9P0I2 261 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 GDF2Q9UK05 429 aaPredicted RBP12.36□□□□□ -0.43
VMP1-209ENST00000588915 CDC42EP3Q9UKI2 254 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 FIS1Q9Y3D6 152 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 TRAF6Q9Y4K3 522 aa12.36□□□□□ -0.43
VMP1-209ENST00000588915 IGKV3D-15A0A087WSY6 115 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 A0A096LNT2 108 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 IGHV3-15A0A0B4J1V0 119 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 NPIPA5A0A0B4J1W7 369 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 A0A1W2PNR3 127 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 SERINC4A6NH21 518 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 NPIPA7E9PJI5 369 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 ABCD4O14678 606 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 SSX4O60224 188 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 NPHS1O60500 1241 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 NPIPA8P0DM63 369 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 EFNA1P20827 205 aaPredicted RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 PTAFRP25105 342 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 TTKP33981 857 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 QPRTQ15274 297 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 ZNF141Q15928 474 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 TIGD2Q4W5G0 525 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 C6orf52Q5T4I8 152 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 FBXW9Q5XUX1 488 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 AP1ARQ63HQ0 302 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 KLHL17Q6TDP4 642 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 CLEC2AQ6UVW9 174 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 MTDHQ86UE4 582 aaKnown RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 EIF1ADQ8N9N8 165 aaKnown RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 OR7A2PQ8NGA2 310 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 SLC25A43Q8WUT9 341 aaPredicted RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 NANOS1Q8WY41 292 aaKnown RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 OR5B2Q96R09 309 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 TNFRSF13CQ96RJ3 184 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 BHLHE41Q9C0J9 482 aaPredicted RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 EML4Q9HC35 981 aaKnown RBP12.35□□□□□ -0.43
VMP1-209ENST00000588915 KCNE3Q9Y6H6 103 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 ALPK2Q86TB3 2170 aa12.35□□□□□ -0.43
VMP1-209ENST00000588915 CUBNO60494 3623 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 GPR171O14626 319 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 DNPH1O43598 174 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 H6PDO95479 791 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 GUSBP08236 651 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 DHRS4L1P0CG22 281 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 SLC25A16P16260 332 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 KRT4P19013 534 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 PGCP20142 388 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 PRPS1L1P21108 318 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 THBS2P35442 1172 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 APOBEC1P41238 236 aaKnown RBP12.34□□□□□ -0.43
VMP1-209ENST00000588915 CLK1P49759 484 aaKnown RBP12.34□□□□□ -0.43
VMP1-209ENST00000588915 DIO1P49895 249 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 NUDT6P53370 316 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 SESN3P58005 492 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 VLDLRP98155 873 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 SKP2Q13309 424 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 PCLAFQ15004 111 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 RAB35Q15286 201 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 TMEM249Q2WGJ8 235 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 SPDYE7PQ495Y7 208 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 OR7E24Q6IFN5 339 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 C11orf71Q6IPW1 123 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 ZNF544Q6NX49 715 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 DDIASQ8IXT1 998 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 FBXL14Q8N1E6 418 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 DEPDC4Q8N2C3 294 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 ZNF614Q8N883 585 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 RFWD2Q8NHY2 731 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 ZNF524Q96C55 264 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 OR7D2Q96RA2 312 aa12.34□□□□□ -0.43
VMP1-209ENST00000588915 ZNF300Q96RE9 604 aaPredicted RBP12.34□□□□□ -0.43
VMP1-209ENST00000588915 THUMPD3Q9BV44 507 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms