RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SFRP5Q5T4F7 317 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 OR4F3Q6IEY1 312 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 Q6ZT83 130 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 ZNF550Q7Z398 422 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 ABHD3Q8WU67 409 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 OTUB1Q96FW1 271 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 SLC35G5Q96KT7 338 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 CCDC115Q96NT0 180 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 HS3ST6Q96QI5 342 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 SRXN1Q9BYN0 137 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 GRIP2Q9C0E4 1043 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 KCNE5Q9UJ90 142 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 LIPT1Q9Y234 373 aa12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 SPIN1Q9Y657 262 aaPredicted RBP12.9□□□□□ -0.34
SMARCE1-216ENST00000580419 E9PBE3 544 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 FAAHO00519 579 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 HS3ST1O14792 307 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 OIP5O43482 229 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 FCMRO60667 390 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 CSTAP01040 98 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 SHC1P29353 583 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 SFTPDP35247 375 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 PGM1P36871 562 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 HTR3AP46098 478 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 OR3A2P47893 321 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 ANXA11P50995 505 aaKnown RBP12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 TOMM34Q15785 309 aaPredicted RBP12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 EXOC3L2Q2M3D2 409 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 PGS1Q32NB8 556 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 Q5PR19 223 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 ZNF704Q6ZNC4 412 aaPredicted RBP12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 TMPPEQ6ZT21 453 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 C16orf62Q7Z3J2 963 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 SPATA19Q7Z5L4 167 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 TRIML2Q8N7C3 387 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 GLB1L3Q8NCI6 653 aaPredicted RBP12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 OR5D16Q8NGK9 328 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 OR5AK3PQ8NH89 298 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 RAB3IL1Q8TBN0 382 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 ROBO4Q8WZ75 1007 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 PSD2Q9BQI7 771 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 PARD6BQ9BYG5 372 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 POTEKPQ9BYX7 375 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 C20orf27Q9GZN8 174 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 CXorf56Q9H5V9 222 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 TMEM185BQ9H7F4 350 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 ING1Q9UK53 422 aaPredicted RBP12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 CLEC4AQ9UMR7 237 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 HDGFL3Q9Y3E1 203 aa12.89□□□□□ -0.35
SMARCE1-216ENST00000580419 GOLGA8QA0A0J9YX86 632 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 GOLGA8OA6NCC3 632 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 GOLGA8NF8WBI6 632 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 SLCO1B7G3V0H7 640 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 HEXAP06865 529 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 COX5AP20674 150 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 ENPP1P22413 925 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 SOAT1P35610 550 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 KHKP50053 298 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 SESN3P58005 492 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 PHC1P78364 1004 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 STX3Q13277 289 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 PDCD2Q16342 344 aaPredicted RBP12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 TIGD2Q4W5G0 525 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 SYT14P1Q58G82 188 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 TYW3Q6IPR3 259 aaKnown RBP12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 GRINAQ7Z429 371 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 MTDHQ86UE4 582 aaKnown RBP12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 TUSC5Q8IXB3 177 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 CLECL1Q8IZS7 167 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 ZNF619Q8N2I2 560 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 OR4A15Q8NGL6 344 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 ROPN1LQ96C74 230 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 TRNT1Q96Q11 434 aaKnown RBP12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 OR51I1Q9H343 314 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 ESRP2Q9H6T0 727 aaKnown RBP12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 UBTD1Q9HAC8 227 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 TRAPPC4Q9Y296 219 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 WDR45Q9Y484 360 aa12.88□□□□□ -0.35
SMARCE1-216ENST00000580419 NPIPA5A0A0B4J1W7 369 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 NPIPA7E9PJI5 369 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 GPR171O14626 319 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 PGM3O95394 542 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 PMS2P2O95744 297 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 FESP07332 822 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 NPIPA8P0DM63 369 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 ADSLP30566 484 aaPredicted RBP12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 SLC16A1P53985 500 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 GPR68Q15743 365 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 ZSWIM7Q19AV6 140 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 NCMAPQ5T1S8 102 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 ANKRD34AQ69YU3 496 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 ABLIM2Q6H8Q1 611 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 PPP4R4Q6NUP7 873 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 NUFIP2Q7Z417 695 aaKnown RBP12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 ZNF614Q8N883 585 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 PIWIL2Q8TC59 973 aaKnown RBP12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 NUDT8Q8WV74 236 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 TMEM171Q8WVE6 324 aa12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 ZNF75CPQ92670 426 aaPredicted RBP12.87□□□□□ -0.35
SMARCE1-216ENST00000580419 KISS1RQ969F8 398 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms