RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ATG4DQ86TL0 474 aaPredicted RBP14.67□□□□□ -0.06
SS18-211ENST00000578954 HIPK1Q86Z02 1210 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 ICA1LQ8NDH6 482 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 OR2M7Q8NG81 312 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 OR4K17Q8NGC6 315 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 SLC7A13Q8TCU3 470 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 TM9SF4Q92544 642 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 SLC38A4Q969I6 547 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 C1GALT1C1Q96EU7 318 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 C5orf34Q96MH7 638 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 OSBPL10Q9BXB5 764 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 C8orf4Q9NR00 106 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 MED17Q9NVC6 651 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 TUBA8Q9NY65 449 aaPredicted RBP14.67□□□□□ -0.06
SS18-211ENST00000578954 FBXL2Q9UKC9 423 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 SLC7A7Q9UM01 511 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 U3KQV3 271 aa14.67□□□□□ -0.06
SS18-211ENST00000578954 DMXL2Q8TDJ6 3036 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 CHD8Q9HCK8 2581 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 A0A087WZY1 265 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 SH3PXD2BA1X283 911 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 C7orf72A4D263 438 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 PINLYPA6NC86 204 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 G3V3Y1 287 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 GNB5O14775 395 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 E2F6O75461 281 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 CBR3O75828 277 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ZNF23P17027 643 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 PRKCAP17252 672 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 RBM34P42696 430 aaKnown RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 PTDSS1P48651 473 aaKnown RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 MASP1P48740 699 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 PPP1R8Q12972 351 aaKnown RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 HYAL4Q2M3T9 481 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 PLPPR5Q32ZL2 321 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ALG10BQ5I7T1 473 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 DCST1Q5T197 706 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 LPCAT4Q643R3 524 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ZNF770Q6IQ21 691 aaPredicted RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 WDR88Q6ZMY6 472 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 GRINAQ7Z429 371 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ZDHHC13Q8IUH4 622 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 NKAIN4Q8IVV8 208 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 SULF2Q8IWU5 870 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 CADM2Q8N3J6 435 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 LINC00471Q8N535 108 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 TMEM178AQ8NBL3 297 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 OR1J4Q8NGS1 313 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ZNF563Q8TA94 476 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ACOT11Q8WXI4 607 aaPredicted RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 TMEM234Q8WY98 164 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ALPK1Q96QP1 1244 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 BARD1Q99728 777 aaKnown RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 CIB1Q99828 191 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 C9orf16Q9BUW7 83 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 HES7Q9BYE0 225 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 UBQLN3Q9H347 655 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 PTGES2Q9H7Z7 377 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 ZFP64Q9NPA5 681 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 RPS6KB2Q9UBS0 482 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 BOKQ9UMX3 212 aaPredicted RBP14.66□□□□□ -0.06
SS18-211ENST00000578954 C15orf41Q9Y2V0 281 aa14.66□□□□□ -0.06
SS18-211ENST00000578954 A0A087WUJ7 227 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 A0A087WUU8 490 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 TRAV17A0A0B4J275 112 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 SAC3D1A6NKF1 404 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 G3V2T6 193 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 MKRN2OSH3BPM6 223 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 PEX1O43933 1283 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 NUDT14O95848 222 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 PNMTP11086 282 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 GP1BBP13224 206 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 HTR3AP46098 478 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 ARHGDIAP52565 204 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 DSCR4P56555 118 aaPredicted RBP14.65□□□□□ -0.06
SS18-211ENST00000578954 SEC23BQ15437 767 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 MICAQ29983 383 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 ZNF766Q5HY98 468 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 FGD3Q5JSP0 725 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 PODNL1Q6PEZ8 512 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 ARSKQ6UWY0 536 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 GALNTL5Q7Z4T8 443 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 PACRGLQ8N7B6 248 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 ZFP62Q8NB50 900 aaPredicted RBP14.65□□□□□ -0.06
SS18-211ENST00000578954 CATSPER1Q8NEC5 780 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 OR52J3Q8NH60 311 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 GIPC3Q8TF64 312 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 EME1Q96AY2 570 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 DTNBP1Q96EV8 351 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 MRGPRX4Q96LA9 322 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 HS6ST2Q96MM7 605 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.65□□□□□ -0.06
SS18-211ENST00000578954 USE1Q9NZ43 259 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 OSGIN1Q9UJX0 560 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 MRPS18CQ9Y3D5 142 aaKnown RBP14.65□□□□□ -0.06
SS18-211ENST00000578954 CSAG2Q9Y5P2 127 aa14.65□□□□□ -0.06
SS18-211ENST00000578954 TNRC6AQ8NDV7 1962 aaKnown RBP14.64□□□□□ -0.07
SS18-211ENST00000578954 KLRC4-KLRK1H3BQV0 150 aa14.64□□□□□ -0.07
SS18-211ENST00000578954 GLSO94925 669 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms