RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CCDC182A6NF36 153 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 CD8B2A6NJW9 211 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 TGFBR3LH3BV60 316 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 I3L1I5 382 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 RNF13O43567 381 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 CD8BP10966 210 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 RBM34P42696 430 aaKnown RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 HTR3AP46098 478 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 BLKP51451 505 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 KLHL12Q53G59 568 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 PARGQ86W56 976 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 LSMEM1Q8N8F7 131 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 OR51A7Q8NH64 312 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 EFHD2Q96C19 240 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 RBM18Q96H35 190 aaKnown RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 VSTM2LQ96N03 204 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 GPR174Q9BXC1 333 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 TRIM2Q9C040 744 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 INPP5EQ9NRR6 644 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 ZNF69Q9UC07 566 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 BAIAP2Q9UQB8 552 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SIRT4Q9Y6E7 314 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 C2orf92A0A1B0GVN3 265 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 A0A1W2PPC4 97 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 DAPL1A0PJW8 107 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SLC9B1P1A6NJY1 282 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 B4DGG1 531 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 GTPBP1O00178 669 aaKnown RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 HRKO00198 91 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 FOXS1O43638 330 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SRPX2O60687 465 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 CTNSO60931 367 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 NCR1O76036 304 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 RNH1P13489 461 aaKnown RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 IL9P15248 144 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 CFL1P23528 166 aaKnown RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 SSTR4P31391 388 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 IGLV3-21P80748 117 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 STX4Q12846 297 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SRSF5Q13243 272 aaKnown RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 FHL1Q13642 323 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 TAB1Q15750 504 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 PYDC2Q56P42 97 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 ZNF544Q6NX49 715 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 ZNF517Q6ZMY9 492 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 Q6ZS52 159 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 OR4C6Q8NH72 309 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SLC35B4Q969S0 331 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 KLHDC7BQ96G42 594 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 PHOX2BQ99453 314 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 TBX5Q99593 518 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 ORAI3Q9BRQ5 295 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 LRRC61Q9BV99 259 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SLC22A4Q9H015 551 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 PPP1R3EQ9H7J1 279 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 WSB2Q9NYS7 404 aaPredicted RBP9.3□□□□□ -0.92
VPS53-220ENST00000576149 HCN3Q9P1Z3 774 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 DTX4Q9Y2E6 619 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 SLCO1B1Q9Y6L6 691 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 RIIAD1A6NNX1 92 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 NPIPB9F8W1W9 429 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 HPGDSO60760 199 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 REM1O75628 298 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 RGS9O75916 674 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 NGFRP08138 427 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 PEPDP12955 493 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 SLC2A5P22732 501 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 NOS3P29474 1203 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 RPS7P62081 194 aaKnown RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 DBPQ10586 325 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 CRMP1Q14194 572 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ZNF141Q15928 474 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ALG10BQ5I7T1 473 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 FCRLBQ6BAA4 426 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 CNIH2Q6PI25 160 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 METAP1DQ6UB28 335 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 NPSR1Q6W5P4 371 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 LINC00114Q6XXX2 140 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 RTL4Q6ZR62 310 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 OAFQ86UD1 273 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 GATAD2AQ86YP4 633 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 RAB43Q86YS6 212 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ZNF595Q8IYB9 648 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 OR10H4Q8NGA5 316 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 PEX11GQ96HA9 241 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 AHCYL2Q96HN2 611 aaKnown RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 FRMD6Q96NE9 622 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 TNFRSF13CQ96RJ3 184 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 HOXD1Q9GZZ0 328 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 RNF32Q9H0A6 362 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 OR51V1Q9H2C8 321 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 KCNN2Q9H2S1 579 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 TRIM36Q9NQ86 728 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 POU2F3Q9UKI9 436 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 NDRG2Q9UN36 371 aaKnown RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 CLDN16Q9Y5I7 305 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 BLACEA4D250 179 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 DVL2O14641 736 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 HRO43593 1189 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms