RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 C1QTNF9BB2RNN3 333 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 SLC1A7O00341 560 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 CDC40O60508 579 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS39-213ENST00000570062 TPST2O60704 377 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 NOL3O60936 208 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 MITFO75030 526 aaPredicted RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 BCAS1O75363 584 aaPredicted RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 IGKV1D-16P01601 117 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 TFAP2AP05549 437 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 PIPP12273 146 aaPredicted RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 POU2F1P14859 743 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 JUNBP17275 347 aaPredicted RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 CSRP1P21291 193 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 POU1F1P28069 291 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 ACAA2P42765 397 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 SLC1A3P43003 542 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 IDH2P48735 452 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 P2RX1P51575 399 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 CDK5Q00535 292 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 SEC23BQ15437 767 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 OCLNQ16625 522 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 MEP1AQ16819 746 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 ZBED5Q49AG3 693 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 TMEM201Q5SNT2 666 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 C12orf73Q69YU5 71 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 JMJD6Q6NYC1 403 aaPredicted RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 TMEM81Q6P7N7 255 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 RTL4Q6ZR62 310 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 PRSS48Q7RTY5 328 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 GPR141Q7Z602 305 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 RAB43Q86YS6 212 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 GPALPP1Q8IXQ4 340 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 GALNT15Q8N3T1 639 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 Q8N3U1 123 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 FAM26EQ8N5C1 309 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 ZNF540Q8NDQ6 660 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 OR2T33Q8NG76 320 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 OR5W2Q8NH69 310 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 FAM81AQ8TBF8 368 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 BRIX1Q8TDN6 353 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 ELP5Q8TE02 316 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 DOK4Q8TEW6 326 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 CNOT9Q92600 299 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 BPIFA2Q96DR5 249 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 ARSGQ96EG1 525 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 CRELD1Q96HD1 420 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 PLEKHA8Q96JA3 519 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 ZNF426Q9BUY5 554 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 FBXO34Q9NWN3 711 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 MYOTQ9UBF9 498 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 REV1Q9UBZ9 1251 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 DTX4Q9Y2E6 619 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 YARS2Q9Y2Z4 477 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 CDH10Q9Y6N8 788 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 GON4LQ3T8J9 2241 aa7.31□□□□□ -1.24
VPS39-213ENST00000570062 TDRD6O60522 2096 aaKnown RBP7.31□□□□□ -1.24
VPS39-213ENST00000570062 MAP1BP46821 2468 aaKnown RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 DMXL1Q9Y485 3027 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 KMT2EQ8IZD2 1858 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 IGHV1-45A0A0A0MS14 117 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 NSG1A0A0A6YYJ2 146 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 TRBV11-1A0A0K0K1C0 115 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 DPPA5A6NC42 116 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 UNC119BA6NIH7 251 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ELOA3DA6NLF2 546 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 CLCA1A8K7I4 914 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 EFCAB9A8MZ26 197 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FAM47E-STBD1D6RA91 191 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 KLF4O43474 513 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 RGS10O43665 173 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 IDH3BO43837 385 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 OR2T1O43869 369 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FADS1O60427 444 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 FAM20BO75063 409 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 CNOT3O75175 753 aaKnown RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 KLF7O75840 302 aaPredicted RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 CLIC3O95833 236 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 DLGAP3O95886 979 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 HPP00738 406 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 IFNGP01579 166 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 GKN3PP0CG01 181 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 SMIM18P0DKX4 95 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 GP1BBP13224 206 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 IFI30P13284 250 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 CYP4B1P13584 511 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ATP6V1B1P15313 513 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 TCN2P20062 427 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 EVI2BP34910 448 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 GRK5P34947 590 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 POLR2IP36954 125 aaKnown RBP7.3□□□□□ -1.24
VPS39-213ENST00000570062 CAPZA2P47755 286 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ALDH3B2P48448 385 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 PCYT1AP49585 367 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 PRPS1P60891 318 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 GINS1Q14691 196 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 MFSD13AQ14CX5 517 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ELOA3BQ3SY89 546 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 KLHL22Q53GT1 634 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 ARMC4Q5T2S8 1044 aa7.3□□□□□ -1.24
VPS39-213ENST00000570062 STPG1Q5TH74 334 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms