RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CDKN2CP42773 168 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 CHRNEQ04844 493 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 MERTKQ12866 999 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 DEFB113Q30KQ7 82 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 SLC9B1Q4ZJI4 515 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 STAC2Q6ZMT1 411 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 FRRS1Q6ZNA5 592 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 HMGN2P46Q86SG4 172 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 TUSC5Q8IXB3 177 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 ZNF563Q8TA94 476 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 PIWIL2Q8TC59 973 aaKnown RBP18.5■□□□□ 0.55
CLN3-219ENST00000565778 RNF128Q8TEB7 428 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 OIT3Q8WWZ8 545 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 ST8SIA1Q92185 356 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 MARK4Q96L34 752 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 ALPK1Q96QP1 1244 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 OR5B2Q96R09 309 aa18.5■□□□□ 0.55
CLN3-219ENST00000565778 AKAP6Q13023 2319 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 DEFB108AA8MXU0 73 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 ETV2O00321 342 aaPredicted RBP18.49■□□□□ 0.55
CLN3-219ENST00000565778 RFXANKO14593 260 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 DNAJA2O60884 412 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 H6PDO95479 791 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 CD99P14209 185 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 ENPP1P22413 925 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 PGM1P36871 562 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 RAC3P60763 192 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 PPP2R2AP63151 447 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 KCNJ10P78508 379 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 FUT5Q11128 374 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 SYPL1Q16563 259 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 PDCD4Q53EL6 469 aaKnown RBP18.49■□□□□ 0.55
CLN3-219ENST00000565778 AP1ARQ63HQ0 302 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 C3orf33Q6P1S2 294 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 C22orf34Q6ZV56 151 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 TGIF2LYQ8IUE0 185 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 SLC43A2Q8N370 569 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 MAELQ96JY0 434 aaKnown RBP18.49■□□□□ 0.55
CLN3-219ENST00000565778 COQ10BQ9H8M1 238 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 ACER3Q9NUN7 267 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 LIPT1Q9Y234 373 aa18.49■□□□□ 0.55
CLN3-219ENST00000565778 PRRC2AP48634 2157 aaKnown RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 IGHV3-15A0A0B4J1V0 119 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 PRAMEF27A3QJZ7 478 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 KLF11O14901 512 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 UBDO15205 165 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 SIAH2O43255 324 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 YES1P07947 543 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 NID1P14543 1247 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 PPP3CBP16298 524 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 TXNL4AP83876 142 aaKnown RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 GSTA3Q16772 222 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 AGBL2Q5U5Z8 902 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 PLEKHM3Q6ZWE6 761 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 NUFIP2Q7Z417 695 aaKnown RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 ARFGAP2Q8N6H7 521 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 ANKFN1Q8N957 763 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 PNPT1Q8TCS8 783 aaKnown RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 TRNT1Q96Q11 434 aaKnown RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 MTHFD2LQ9H903 347 aaPredicted RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 KLHL13Q9P2N7 655 aa18.48■□□□□ 0.55
CLN3-219ENST00000565778 HRNRQ86YZ3 2850 aaPredicted RBP18.48■□□□□ 0.55
CLN3-219ENST00000565778 CLDN24A6NM45 220 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 DIAPH2O60879 1101 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 BCAS1O75363 584 aaPredicted RBP18.47■□□□□ 0.55
CLN3-219ENST00000565778 ANP32DO95626 131 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 KRT75O95678 551 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 NR2F1P10589 423 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 TFPIP10646 304 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 CD53P19397 219 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 APOBEC1P41238 236 aaKnown RBP18.47■□□□□ 0.55
CLN3-219ENST00000565778 COX20Q5RI15 118 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 MAVSQ7Z434 540 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 OR52B2Q96RD2 323 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 GP6Q9HCN6 339 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 GPR52Q9Y2T5 361 aa18.47■□□□□ 0.55
CLN3-219ENST00000565778 ABCA4P78363 2273 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 KLK2P20151 261 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 RASGEF1BQ0VAM2 473 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 LRRC74BQ6ZQY2 392 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 FAM71CQ8NEG0 241 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 TMUB1Q9BVT8 246 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 HDHD5Q9BXW7 423 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 ACTR6Q9GZN1 396 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 SLC38A1Q9H2H9 487 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 RMND5AQ9H871 391 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 CTPS2Q9NRF8 586 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 ZIM2Q9NZV7 527 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 KLHL9Q9P2J3 617 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 USH1CQ9Y6N9 552 aa18.46■□□□□ 0.55
CLN3-219ENST00000565778 SULT2B1O00204 365 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 THBDP07204 575 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 CHRM4P08173 479 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 IL7RP16871 459 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 IDH2P48735 452 aaKnown RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 POLR2JP52435 117 aaKnown RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 CSNK2A1P68400 391 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 GNA13Q14344 377 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 SYT14P1Q58G82 188 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 ALKBH2Q6NS38 261 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms