RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 USB1Q9BQ65 265 aaKnown RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 TRAF4Q9BUZ4 470 aaPredicted RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 ALG2Q9H553 416 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 EML4Q9HC35 981 aaKnown RBP14.92□□□□□ -0.02
CLN3-211ENST00000564091 YAE1D1Q9NRH1 226 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 CADP27708 2225 aa14.92□□□□□ -0.02
CLN3-211ENST00000564091 CENPVL1A0A0U1RR11 272 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 TLDC2A0PJX2 215 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 SERINC4A6NH21 518 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 SHISA9B4DS77 424 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 ETV2O00321 342 aaPredicted RBP14.91□□□□□ -0.02
CLN3-211ENST00000564091 CFLARO15519 480 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 FCMRO60667 390 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 CYTIPO60759 359 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 LYPLA1O75608 230 aaPredicted RBP14.91□□□□□ -0.02
CLN3-211ENST00000564091 FESP07332 822 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 IGHV1-2P23083 117 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 SOAT1P35610 550 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 CBFBQ13951 182 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 GPR68Q15743 365 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 LSM12Q3MHD2 195 aaKnown RBP14.91□□□□□ -0.02
CLN3-211ENST00000564091 C6orf136Q5SQH8 315 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 DNAJC14Q6Y2X3 702 aaPredicted RBP14.91□□□□□ -0.02
CLN3-211ENST00000564091 DNM1P46Q6ZS02 220 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 CLEC4FQ8N1N0 589 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 FNDC5Q8NAU1 212 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 HS6ST2Q96MM7 605 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 THUMPD3Q9BV44 507 aaKnown RBP14.91□□□□□ -0.02
CLN3-211ENST00000564091 SERHL2Q9H4I8 314 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 PPCSQ9HAB8 311 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 ATAD3AQ9NVI7 634 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 NPAP1Q9NZP6 1156 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 SLC17A7Q9P2U7 560 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 KCNE5Q9UJ90 142 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 ABCA1O95477 2261 aa14.91□□□□□ -0.02
CLN3-211ENST00000564091 HEATR5AQ86XA9 2040 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 SVEP1Q4LDE5 3571 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 ABCD4O14678 606 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 SKAP2O75563 359 aaPredicted RBP14.9□□□□□ -0.02
CLN3-211ENST00000564091 IGHV3-9P01782 118 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 GGT1P19440 569 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 ARRB2P32121 409 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 CDH11P55287 796 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 SESN3P58005 492 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 HBA1P69905 142 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 HMBOX1Q6NT76 420 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 RIMKLAQ8IXN7 391 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 ZNF100Q8IYN0 542 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 NATD1Q8N6N6 113 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 SFXN5Q8TD22 340 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 MOAP1Q96BY2 351 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 MUCL1Q96DR8 90 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 APOPT1Q96IL0 206 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 PRPF18Q99633 342 aaKnown RBP14.9□□□□□ -0.02
CLN3-211ENST00000564091 DUSP26Q9BV47 211 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 LAT2Q9GZY6 243 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 L2HGDHQ9H9P8 463 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 ZDHHC2Q9UIJ5 367 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 B3GALT5Q9Y2C3 310 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 RTTNQ86VV8 2226 aa14.9□□□□□ -0.02
CLN3-211ENST00000564091 MXRA5Q9NR99 2828 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 ZNF724A8MTY0 619 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 CD5LO43866 347 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 SSX4O60224 188 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 SPAG7O75391 227 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 UBTFL6P0CB48 400 aaPredicted RBP14.89□□□□□ -0.03
CLN3-211ENST00000564091 G6PDP11413 515 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 MATN1P21941 496 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 DIO1P49895 249 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 CASP9P55211 416 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 MERTKQ12866 999 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 SKP2Q13309 424 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 TIMM23BQ5SRD1 257 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 C3orf33Q6P1S2 294 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 TMPPEQ6ZT21 453 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 C6orf120Q7Z4R8 191 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 GALNT5Q7Z7M9 940 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 DTX2Q86UW9 622 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 CLECL1Q8IZS7 167 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 ARL8AQ96BM9 186 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 DNAJA3Q96EY1 480 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 BHLHE41Q9C0J9 482 aaPredicted RBP14.89□□□□□ -0.03
CLN3-211ENST00000564091 MKS1Q9NXB0 559 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 MKLN1Q9UL63 735 aa14.89□□□□□ -0.03
CLN3-211ENST00000564091 IGHV4-30-2A0A087WSY4 118 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 TLX2O43763 284 aaPredicted RBP14.88□□□□□ -0.03
CLN3-211ENST00000564091 GPRIN2O60269 458 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 DNAJA2O60884 412 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 UGT2B17O75795 530 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 PGM3O95394 542 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 CSTAP01040 98 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 COX5AP20674 150 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 PRPS1L1P21108 318 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 ZNF141Q15928 474 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 PGS1Q32NB8 556 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 LSRQ86X29 649 aaPredicted RBP14.88□□□□□ -0.03
CLN3-211ENST00000564091 HOMEZQ8IX15 550 aa14.88□□□□□ -0.03
CLN3-211ENST00000564091 PIAS4Q8N2W9 510 aaPredicted RBP14.88□□□□□ -0.03
CLN3-211ENST00000564091 ZNF433Q8N7K0 673 aaPredicted RBP14.88□□□□□ -0.03
CLN3-211ENST00000564091 ST8SIA1Q92185 356 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms