RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 A0A0G2JPF8 293 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 A0A0J9YW62 118 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 CENPVL1A0A0U1RR11 272 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 EVPLLA8MZ36 301 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 HNRNPCL2B2RXH8 293 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 HNRNPCL3B7ZW38 293 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 CXCL13O43927 109 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 HNRNPCL1O60812 293 aaKnown RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 NTN1O95631 604 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 PLGP00747 810 aaPredicted RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 C1QCP02747 245 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 BCHEP06276 602 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 VIMP08670 466 aaKnown RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 TFPTP0C1Z6 253 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 HNRNPCL4P0DMR1 293 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 PRF1P14222 555 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 NID1P14543 1247 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 CAPN3P20807 821 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 SLC7A1P30825 629 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 SFTPDP35247 375 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 APOBEC1P41238 236 aaKnown RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 KIR2DL3P43628 341 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 DLX5P56178 289 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 CTBP2P56545 445 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 SESN3P58005 492 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 TLE4Q04727 773 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 LARS2Q15031 903 aaKnown RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 RGNQ15493 299 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 TOMM34Q15785 309 aaPredicted RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 CTU2Q2VPK5 515 aaKnown RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 TMEM176BQ3YBM2 270 aaPredicted RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 GTDC1Q4AE62 458 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 LIN52Q52LA3 116 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 PRAMEF8Q5VWM4 474 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 PRAMEF7Q5VXH5 474 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 PLXDC2Q6UX71 529 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 SLC25A43Q8WUT9 341 aaPredicted RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 AURKBQ96GD4 344 aaPredicted RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 GMPPAQ96IJ6 420 aaPredicted RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 KLHDC3Q9BQ90 382 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 RBM24Q9BX46 236 aaKnown RBP12.02□□□□□ -0.49
CLK3-213ENST00000563842 TMEM185BQ9H7F4 350 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 MCCC2Q9HCC0 563 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 IFT52Q9Y366 437 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 NDUFAF1Q9Y375 327 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 EMC9Q9Y3B6 208 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 GMEB1Q9Y692 573 aa12.02□□□□□ -0.49
CLK3-213ENST00000563842 APCP25054 2843 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 A8MXE2 369 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 C5orf58C9J3I9 102 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 ANGPT2O15123 496 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 TNFSF13O75888 250 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 SMNDC1O75940 238 aaKnown RBP eCLIP12.01□□□□□ -0.496e-7■■□□□ 13.7
CLK3-213ENST00000563842 OPN1LWP04000 364 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 BMP2P12643 396 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 RPS4Y1P22090 263 aaKnown RBP12.01□□□□□ -0.49
CLK3-213ENST00000563842 RYKP34925 604 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 HTR3AP46098 478 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 PCYT1AP49585 367 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 ARFIP2P53365 341 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 MERTKQ12866 999 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 FAM214BQ7L5A3 538 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 GRINAQ7Z429 371 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 LUZP2Q86TE4 346 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 ATP6V1C2Q8NEY4 427 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 OR52P1PQ8NH57 321 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 FAM222BQ8WU58 562 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 SLC38A5Q8WUX1 472 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 TMEM19Q96HH6 336 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 QRSL1Q9H0R6 528 aaKnown RBP12.01□□□□□ -0.49
CLK3-213ENST00000563842 CCDC134Q9H6E4 229 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 A4GALTQ9NPC4 353 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 FANCFQ9NPI8 374 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 SLC52A3Q9NQ40 469 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.01□□□□□ -0.49
CLK3-213ENST00000563842 FREM1Q5H8C1 2179 aa12.01□□□□□ -0.49
CLK3-213ENST00000563842 TUBAL3A6NHL2 446 aa12□□□□□ -0.49
CLK3-213ENST00000563842 FAAHO00519 579 aa12□□□□□ -0.49
CLK3-213ENST00000563842 EFNA2O43921 213 aa12□□□□□ -0.49
CLK3-213ENST00000563842 AQP8O94778 261 aa12□□□□□ -0.49
CLK3-213ENST00000563842 THBS1P07996 1170 aa12□□□□□ -0.49
CLK3-213ENST00000563842 CD8BP10966 210 aa12□□□□□ -0.49
CLK3-213ENST00000563842 HOXB9P17482 250 aaPredicted RBP12□□□□□ -0.49
CLK3-213ENST00000563842 IL11P20809 199 aa12□□□□□ -0.49
CLK3-213ENST00000563842 KIR2DL2P43627 348 aaPredicted RBP12□□□□□ -0.49
CLK3-213ENST00000563842 CLK1P49759 484 aaKnown RBP12□□□□□ -0.49
CLK3-213ENST00000563842 MAP2K6P52564 334 aa12□□□□□ -0.49
CLK3-213ENST00000563842 RAC3P60763 192 aa12□□□□□ -0.49
CLK3-213ENST00000563842 SIRPAP78324 504 aa12□□□□□ -0.49
CLK3-213ENST00000563842 RNPS1Q15287 305 aaKnown RBP12□□□□□ -0.49
CLK3-213ENST00000563842 PAGE3Q5JUK9 113 aa12□□□□□ -0.49
CLK3-213ENST00000563842 MRPL2Q5T653 305 aaKnown RBP12□□□□□ -0.49
CLK3-213ENST00000563842 PLEKHM3Q6ZWE6 761 aa12□□□□□ -0.49
CLK3-213ENST00000563842 SLC43A2Q8N370 569 aa12□□□□□ -0.49
CLK3-213ENST00000563842 OR6K3Q8NGY3 331 aa12□□□□□ -0.49
CLK3-213ENST00000563842 BBS10Q8TAM1 723 aa12□□□□□ -0.49
CLK3-213ENST00000563842 CNOT9Q92600 299 aaKnown RBP12□□□□□ -0.49
CLK3-213ENST00000563842 STARD4Q96DR4 205 aa12□□□□□ -0.49
CLK3-213ENST00000563842 SLC39A3Q9BRY0 314 aa12□□□□□ -0.49
CLK3-213ENST00000563842 TMEM120AQ9BXJ8 343 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms