RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 SS18L1O75177 396 aaPredicted RBP14□□□□□ -0.17
VPS39-203ENST00000561797 TGDSO95455 350 aa14□□□□□ -0.17
VPS39-203ENST00000561797 SLC7A1P30825 629 aa14□□□□□ -0.17
VPS39-203ENST00000561797 CRATP43155 626 aa14□□□□□ -0.17
VPS39-203ENST00000561797 AQP5P55064 265 aa14□□□□□ -0.17
VPS39-203ENST00000561797 STX1BP61266 288 aa14□□□□□ -0.17
VPS39-203ENST00000561797 TXNL4AP83876 142 aaKnown RBP14□□□□□ -0.17
VPS39-203ENST00000561797 MERTKQ12866 999 aa14□□□□□ -0.17
VPS39-203ENST00000561797 ZNF239Q16600 458 aaKnown RBP14□□□□□ -0.17
VPS39-203ENST00000561797 C6orf10Q5SRN2 563 aa14□□□□□ -0.17
VPS39-203ENST00000561797 GTF2IRD2BQ6EKJ0 949 aa14□□□□□ -0.17
VPS39-203ENST00000561797 LRRC74BQ6ZQY2 392 aa14□□□□□ -0.17
VPS39-203ENST00000561797 GTF2IRD2Q86UP8 949 aa14□□□□□ -0.17
VPS39-203ENST00000561797 OR6K3Q8NGY3 331 aa14□□□□□ -0.17
VPS39-203ENST00000561797 ZNF563Q8TA94 476 aa14□□□□□ -0.17
VPS39-203ENST00000561797 TMEM234Q8WY98 164 aa14□□□□□ -0.17
VPS39-203ENST00000561797 ST8SIA1Q92185 356 aa14□□□□□ -0.17
VPS39-203ENST00000561797 CPNE4Q96A23 557 aaPredicted RBP14□□□□□ -0.17
VPS39-203ENST00000561797 WFIKKN1Q96NZ8 548 aa14□□□□□ -0.17
VPS39-203ENST00000561797 KLHL4Q9C0H6 718 aa14□□□□□ -0.17
VPS39-203ENST00000561797 C12orf49Q9H741 205 aa14□□□□□ -0.17
VPS39-203ENST00000561797 COQ10BQ9H8M1 238 aa14□□□□□ -0.17
VPS39-203ENST00000561797 PLSCR4Q9NRQ2 329 aa14□□□□□ -0.17
VPS39-203ENST00000561797 GLRX2Q9NS18 164 aa14□□□□□ -0.17
VPS39-203ENST00000561797 KLHL28Q9NXS3 571 aa14□□□□□ -0.17
VPS39-203ENST00000561797 AKAP6Q13023 2319 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 IGHV3-15A0A0B4J1V0 119 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ZCCHC18P0CG32 403 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ETFAP13804 333 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 UGT2B10P36537 528 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 AP1ARQ63HQ0 302 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ANKRD34AQ69YU3 496 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 C3orf33Q6P1S2 294 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 SLC2A7Q6PXP3 512 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 MSANTD1Q6ZTZ1 278 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 PLEKHM3Q6ZWE6 761 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ZNF550Q7Z398 422 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ARFGAP2Q8N6H7 521 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 FAM71CQ8NEG0 241 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ABHD3Q8WU67 409 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 WDR60Q8WVS4 1066 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 OIT3Q8WWZ8 545 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 CNOT9Q92600 299 aaKnown RBP13.99□□□□□ -0.17
VPS39-203ENST00000561797 THOC1Q96FV9 657 aaKnown RBP13.99□□□□□ -0.17
VPS39-203ENST00000561797 AURKBQ96GD4 344 aaPredicted RBP13.99□□□□□ -0.17
VPS39-203ENST00000561797 OR5B2Q96R09 309 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 CCDC28BQ9BUN5 200 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 MTHFD2LQ9H903 347 aaPredicted RBP13.99□□□□□ -0.17
VPS39-203ENST00000561797 TPT1P8Q9HAU6 139 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 SERINC1Q9NRX5 453 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 ACER3Q9NUN7 267 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 TESMINQ9Y4I5 508 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 SPG11Q96JI7 2443 aa13.99□□□□□ -0.17
VPS39-203ENST00000561797 HRNRQ86YZ3 2850 aaPredicted RBP13.98□□□□□ -0.17
VPS39-203ENST00000561797 CSMD2Q7Z408 3487 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 AGAP5A6NIR3 686 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 C16orf97H3BN30 126 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 ETV2O00321 342 aaPredicted RBP13.98□□□□□ -0.17
VPS39-203ENST00000561797 PABPC4LP0CB38 370 aaKnown RBP13.98□□□□□ -0.17
VPS39-203ENST00000561797 IL7RP16871 459 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 ENPP1P22413 925 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 AGTR1P30556 359 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 MVDP53602 400 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 IST1P53990 364 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 DSTNP60981 165 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 PLAURQ03405 335 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 FCRLAQ7L513 359 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 TUSC5Q8IXB3 177 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 RNF128Q8TEB7 428 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 CKAP2Q8WWK9 683 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 DNAJA3Q96EY1 480 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 ZC3HAV1LQ96H79 300 aaKnown RBP13.98□□□□□ -0.17
VPS39-203ENST00000561797 MED18Q9BUE0 208 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 CTPS2Q9NRF8 586 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 CCM2LQ9NUG4 571 aaPredicted RBP13.98□□□□□ -0.17
VPS39-203ENST00000561797 P2RX2Q9UBL9 471 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 ABCA4P78363 2273 aa13.98□□□□□ -0.17
VPS39-203ENST00000561797 MED13LQ71F56 2210 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 NR5A2O00482 541 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 AP3D1O14617 1153 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 ADAM11O75078 769 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 PRKD3O94806 890 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 BCHEP06276 602 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 DBIP07108 87 aaKnown RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 TFPIP10646 304 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 NID1P14543 1247 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 CCNA2P20248 432 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 CCKARP32238 428 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 IDH2P48735 452 aaKnown RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 ART1P52961 327 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 RAC3P60763 192 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 RNPS1Q15287 305 aaKnown RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 MAPK11Q15759 364 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 TMEM201Q5SNT2 666 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 NUFIP2Q7Z417 695 aaKnown RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 LSRQ86X29 649 aaPredicted RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 PEX5LQ8IYB4 626 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 GTF2H4Q92759 462 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 MAGEB18Q96M61 343 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 PAIP1Q9H074 479 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms