RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TMEM178AQ8NBL3 297 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 OR5M3Q8NGP4 307 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 OR2T29Q8NH02 315 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 PHOSPHO1Q8TCT1 267 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 PHF10Q8WUB8 498 aaKnown RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 LRTOMTQ8WZ04 291 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 SPACA9Q96E40 222 aaPredicted RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 SECISBP2Q96T21 854 aaKnown RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 PIP5K1AQ99755 562 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 VKORC1Q9BQB6 163 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 C9orf16Q9BUW7 83 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 POLR2J2Q9GZM3 115 aaKnown RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 QRSL1Q9H0R6 528 aaKnown RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 POLR2J3Q9H1A7 115 aaKnown RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 KLRF1Q9NZS2 232 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 ZNF223Q9UK11 482 aaPredicted RBP10.74□□□□□ -0.69
LDLR-212ENST00000560467 ENPP4Q9Y6X5 453 aa10.74□□□□□ -0.69
LDLR-212ENST00000560467 NAV3Q8IVL0 2385 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 A0A1W2PQD3 144 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 CDHR4A6H8M9 788 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZNF264O43296 627 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 PRKNO60260 465 aaPredicted RBP10.73□□□□□ -0.69
LDLR-212ENST00000560467 NME2P1O60361 137 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 EIF4E2O60573 245 aaKnown RBP10.73□□□□□ -0.69
LDLR-212ENST00000560467 TSPAN2O60636 221 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 UBL4AP11441 157 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 CYP4B1P13584 511 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZNF23P17027 643 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 NME2P22392 152 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 IFNGR2P38484 337 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ADH7P40394 386 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 RFC3P40938 356 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 CYB561P49447 251 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 MLF1P58340 268 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 C17orf67Q0P5P2 114 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 SLC22A10Q63ZE4 541 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 SLC25A25Q6KCM7 469 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZNF836Q6ZNA1 936 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZNF227Q86WZ6 799 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 GRAMD2AQ8IUY3 354 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 SVOPLQ8N434 492 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 MARVELD2Q8N4S9 558 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 TMCO5AQ8N6Q1 288 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ICA1LQ8NDH6 482 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 TOR1AIP2Q8NFQ8 470 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 OR4C3Q8NH37 302 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 RNF217Q8TC41 542 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 CA5BP1Q8WTZ4 195 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 SLCO4A1Q96BD0 722 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZG16BQ96DA0 208 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 POM121Q96HA1 1249 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZNF300Q96RE9 604 aaPredicted RBP10.73□□□□□ -0.69
LDLR-212ENST00000560467 RASL10BQ96S79 203 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 ZNF559Q9BR84 538 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 OSBPL10Q9BXB5 764 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 TRIM2Q9C040 744 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 KRCC1Q9NPI7 259 aaPredicted RBP10.73□□□□□ -0.69
LDLR-212ENST00000560467 NPDC1Q9NQX5 325 aaPredicted RBP10.73□□□□□ -0.69
LDLR-212ENST00000560467 FBXO34Q9NWN3 711 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 LRFN1Q9P244 771 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 SAMHD1Q9Y3Z3 626 aaKnown RBP10.73□□□□□ -0.69
LDLR-212ENST00000560467 ORC6Q9Y5N6 252 aa10.73□□□□□ -0.69
LDLR-212ENST00000560467 NUP214P35658 2090 aaPredicted RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 NPIPA5A0A0B4J1W7 369 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 FAM90A27PA6NNH2 459 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 ALG1L2C9J202 215 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 NPIPA7E9PJI5 369 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 G3V2T6 193 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 H3BNX3 289 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 TNFRSF11BO00300 401 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 PRRG2O14669 202 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 FMO6PO60774 539 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 ICOSLGO75144 302 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 UGT2B11O75310 529 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 OXSR1O95747 527 aaPredicted RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 NUDT14O95848 222 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 IGKV1D-16P01601 117 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 MT-ND1P03886 318 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 P04436 131 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 LINGO3P0C6S8 592 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 UBTFL6P0CB48 400 aaPredicted RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 NPIPA8P0DM63 369 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 RPS4Y1P22090 263 aaKnown RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 MSX1P28360 303 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 DNAJA1P31689 397 aaKnown RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 EVI2BP34910 448 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 MAGEA2P43356 314 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 EEF1A1P68104 462 aaKnown RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 SPIBQ01892 262 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 ST3GAL3Q11203 375 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 SNTA1Q13424 505 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 FGFBP1Q14512 234 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 GRAMD1BQ3KR37 738 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 KRTAP21-3Q3LHN1 58 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 MRPL2Q5T653 305 aaKnown RBP10.72□□□□□ -0.69
LDLR-212ENST00000560467 IL20RBQ6UXL0 311 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 RTL4Q6ZR62 310 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 ZBTB49Q6ZSB9 765 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 PLEKHM3Q6ZWE6 761 aa10.72□□□□□ -0.69
LDLR-212ENST00000560467 OLIG3Q7RTU3 272 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms