RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CD163Q86VB7 1156 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CLIP4Q8N3C7 705 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CADM2Q8N3J6 435 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 FAM156AQ8NDB6 213 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 OR52E4Q8NGH9 312 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 FAM57AQ8TBR7 257 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 GEMIN6Q8WXD5 167 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 TPD52L3Q96J77 140 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 LRGUKQ96M69 825 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 ARHGDIGQ99819 225 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 ZNF559Q9BR84 538 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 THTPAQ9BU02 230 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 UGT2B28Q9BY64 529 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 POLR2J2Q9GZM3 115 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 PRDM14Q9GZV8 571 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 POLR2J3Q9H1A7 115 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 TP63Q9H3D4 680 aaPredicted RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 MMADHCQ9H3L0 296 aaPredicted RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 GORASP2Q9H8Y8 452 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 TMEM27Q9HBJ8 222 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 ACTR3BQ9P1U1 418 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 SPRR3Q9UBC9 169 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 CD300AQ9UGN4 299 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 USP22Q9UPT9 525 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 AP4B1Q9Y6B7 739 aa9.12□□□□□ -0.95
USP3-216ENST00000559873 PRRC2CQ9Y520 2896 aaKnown RBP9.12□□□□□ -0.95
USP3-216ENST00000559873 DNAJC13O75165 2243 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 TRGV8A0A0C4DH27 118 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 B4DXG7 233 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 SEC14L5O43304 696 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 FRS3O43559 492 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 HOXD4P09016 255 aaPredicted RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 NCK1P16333 377 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 ZNF708P17019 499 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 SLC7A1P30825 629 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 POLR2HP52434 150 aaKnown RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 SESN3P58005 492 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 B3GALT5-AS1P59052 145 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 RAC1P63000 192 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 PLAURQ03405 335 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 KCNC4Q03721 635 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 TRIM25Q14258 630 aaKnown RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 BCL2A1Q16548 175 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 NRF1Q16656 503 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 DUSP7Q16829 419 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 TMEM44Q2T9K0 475 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 IFI44LQ53G44 452 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 SWT1Q5T5J6 900 aaKnown RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 MTFR2Q6P444 385 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 PLEKHM3Q6ZWE6 761 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 CBLL1Q75N03 491 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 CARM1Q86X55 608 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 LSMEM1Q8N8F7 131 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 VANGL1Q8TAA9 524 aaPredicted RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 DNAJA4Q8WW22 397 aaPredicted RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 CCDC124Q96CT7 223 aaKnown RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 SLC7A6OSQ96CW6 309 aaPredicted RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 ASB9Q96DX5 294 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 HSH2DQ96JZ2 352 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 LRMDAQ9H2I8 198 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 C12orf10Q9HB07 376 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 PAQR5Q9NXK6 330 aaPredicted RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 GMPR2Q9P2T1 348 aaKnown RBP9.11□□□□□ -0.95
USP3-216ENST00000559873 CHRNA9Q9UGM1 479 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 PACSIN3Q9UKS6 424 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 CAMK2AQ9UQM7 478 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 SH3GLB1Q9Y371 365 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 CHST2Q9Y4C5 530 aa9.11□□□□□ -0.95
USP3-216ENST00000559873 A0A1B0GUH1 482 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 AHRRA9YTQ3 701 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 M0R3H8 397 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 TPST1O60507 370 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 BCAS1O75363 584 aaPredicted RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 GCM2O75603 506 aaPredicted RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 PDE5AO76074 875 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 NTN1O95631 604 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 IFNW1P05000 195 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 PNMTP11086 282 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 FCGR2AP12318 317 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 CPN1P15169 458 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 HOXB6P17509 224 aaKnown RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 GNLYP22749 145 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 CXCR1P25024 350 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 PSMA4P25789 261 aaKnown RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 TACR3P29371 465 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 ACAA2P42765 397 aaKnown RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 CA7P43166 264 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 CLK1P49759 484 aaKnown RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 CRYBA2P53672 197 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 PER3P56645 1201 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 TOMM34Q15785 309 aaPredicted RBP9.1□□□□□ -0.95
USP3-216ENST00000559873 IGFBP7Q16270 282 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 GLIPR1L2Q4G1C9 344 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 LCN8Q6JVE9 175 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 ZNF613Q6PF04 617 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 ULK3Q6PHR2 472 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 POMZP3Q6PJE2 187 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 C5orf46Q6UWT4 87 aa9.1□□□□□ -0.95
USP3-216ENST00000559873 DEF8Q6ZN54 512 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 218.4 ms