RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SLC30A2Q9BRI3 323 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CCDC86Q9H6F5 360 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 ABCB9Q9NP78 766 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 KRCC1Q9NPI7 259 aaPredicted RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 TIGARQ9NQ88 270 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 PRDM9Q9NQV7 894 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SF3B6Q9Y3B4 125 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 TMEM129A0AVI4 362 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SHISA3A0PJX4 238 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 OR2B3O76000 313 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CSTAP01040 98 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 GABRA4P48169 554 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CFHR1Q03591 330 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 DMWDQ09019 674 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CRMP1Q14194 572 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 VWA2Q5GFL6 755 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 ZNF362Q5T0B9 420 aaPredicted RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 TSSK4Q6SA08 328 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CCDC190Q86UF4 302 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 ASB15Q8WXK1 588 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SENP5Q96HI0 755 aaPredicted RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 Q9N2J8 555 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 MRPS18AQ9NVS2 196 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 PLCL2Q9UPR0 1127 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 ADAM18Q9Y3Q7 739 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 SIRT4Q9Y6E7 314 aaPredicted RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 CACNA1EQ15878 2313 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 PCNX3Q9H6A9 2034 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 TAF4O00268 1085 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 HMGN1P05114 100 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 ZNF45Q02386 682 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 RUNX1T1Q06455 604 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 DSG2Q14126 1118 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 PLK5Q496M5 336 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 PRPF38BQ5VTL8 546 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 RNLSQ5VYX0 342 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 PTCRAQ6ISU1 281 aaPredicted RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 NIPAL3Q6P499 406 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 CBLN3Q6UW01 205 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 RPTNQ6XPR3 784 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 ZNF595Q8IYB9 648 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 ZNF485Q8NCK3 441 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 OR4K13Q8NH42 304 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 BRIX1Q8TDN6 353 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 GAL3ST4Q96RP7 486 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 LMF2Q9BU23 707 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 FN3KQ9H479 309 aa9.78□□□□□ -0.84
CUX1-217ENST00000558836 EXOSC1Q9Y3B2 195 aaKnown RBP9.78□□□□□ -0.84
CUX1-217ENST00000558836 A0A1W2PQL4 384 aaPredicted RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 C4orf47A7E2U8 309 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 E9PI62 339 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 SLC30A4O14863 429 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 OIP5O43482 229 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 CHP2O43745 196 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 AK1P00568 194 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 EFNA3P52797 238 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 TAB1Q15750 504 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 MED25Q71SY5 747 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 UBE2J2Q8N2K1 259 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 RFLNBQ8N5W9 214 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 SDR9C7Q8NEX9 313 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 C17orf50Q8WW18 174 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 SLC25A46Q96AG3 418 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 ZNF524Q96C55 264 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 KCTD7Q96MP8 289 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 ZNF559Q9BR84 538 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 MESP1Q9BRJ9 268 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 KATNB1Q9BVA0 655 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 COMMD3Q9UBI1 195 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 MALT1Q9UDY8 824 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 PRR23D1E9PI22 279 aaPredicted RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 LMO7DNF2Z398 122 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 CASKO14936 926 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 PRAMEF2O60811 474 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 PRR23D2P0DMB1 279 aaPredicted RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 ARL4DP49703 201 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 HNRNPKP61978 463 aaKnown RBP eCLIP9.77□□□□□ -0.852e-7■■■■□ 24.1
CUX1-217ENST00000558836 DAB2P98082 770 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 TPBGQ13641 420 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 CD226Q15762 336 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 SMAD2Q15796 467 aaKnown RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 BAK1Q16611 211 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 GARNL3Q5VVW2 1013 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 FAAH2Q6GMR7 532 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 TMPRSS11FQ6ZWK6 438 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 MEPCEQ7L2J0 689 aaKnown RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 RNF113BQ8IZP6 322 aaKnown RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 LNX2Q8N448 690 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 KLHL36Q8N4N3 616 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 DTX3Q8N9I9 347 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 OR52E2Q8NGJ4 325 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 OR5M3Q8NGP4 307 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 OR4C6Q8NH72 309 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 TEAD3Q99594 435 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 TIMP4Q99727 224 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 ALG8Q9BVK2 526 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 PLEKHB1Q9UF11 243 aaPredicted RBP9.77□□□□□ -0.85
CUX1-217ENST00000558836 A3GALT2U3KPV4 340 aa9.77□□□□□ -0.85
CUX1-217ENST00000558836 A0A1B0GVT2 93 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms