RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 EGFP01133 1207 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 SYN1P17600 705 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 OMPP47874 163 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 MTNR1BP49286 362 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 TMEM69Q5SWH9 247 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ATRAIDQ6UW56 229 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 Q6ZNB5 142 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ZNF620Q6ZNG0 422 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 IKBIPQ70UQ0 350 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 MEPCEQ7L2J0 689 aaKnown RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 ESX1Q8N693 406 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ZNF454Q8N9F8 522 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 OVCA2Q8WZ82 227 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 TTC9Q92623 222 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 ZNF707Q96C28 371 aaPredicted RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 RADILQ96JH8 1075 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 FOXN4Q96NZ1 517 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 TMEM168Q9H0V1 697 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 CDV3Q9UKY7 258 aaKnown RBP10.53□□□□□ -0.72
LDLR-208ENST00000558518 PLEKHM1Q9Y4G2 1056 aa10.53□□□□□ -0.72
LDLR-208ENST00000558518 DOK2O60496 412 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 CXCL2P19875 107 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 MAKP20794 623 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 IL32P24001 234 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 ATP5A1P25705 553 aaKnown RBP10.52□□□□□ -0.72
LDLR-208ENST00000558518 MAT2AP31153 395 aaKnown RBP10.52□□□□□ -0.72
LDLR-208ENST00000558518 MMP12P39900 470 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 GDI2P50395 445 aaKnown RBP10.52□□□□□ -0.72
LDLR-208ENST00000558518 ZNF33BQ06732 778 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 NDUFAF6Q330K2 333 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 CLLU1Q5K131 121 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 LIX1LQ8IVB5 337 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 GPALPP1Q8IXQ4 340 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 SHISA5Q8N114 240 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 CPXM2Q8N436 756 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 SGPP1Q9BX95 441 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 LGR4Q9BXB1 951 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 FBXO34Q9NWN3 711 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 HRH3Q9Y5N1 445 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 AP1M2Q9Y6Q5 423 aa10.52□□□□□ -0.72
LDLR-208ENST00000558518 KDM4EB2RXH2 506 aaPredicted RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 TOR1AO14656 332 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 PRKNO60260 465 aaPredicted RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 PPM1BO75688 479 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 AIFM1O95831 613 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 TBX6O95947 436 aaPredicted RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 ZNF35P13682 527 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 PCSK2P16519 638 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 CCR2P41597 374 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 STARP49675 285 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 C21orf58P58505 322 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 CAP1Q01518 475 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 TCEAL5Q5H9L2 206 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 POMZP3Q6PJE2 187 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 ACOT4Q8N9L9 421 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 POGLUT1Q8NBL1 392 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 OR51Q1Q8NH59 317 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 OR56B4Q8NH76 319 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 IRF7Q92985 503 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 METTL2AQ96IZ6 378 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 TEAD3Q99594 435 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 SLC38A1Q9H2H9 487 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 SIDT1Q9NXL6 827 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 PEX12O00623 359 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 TGM5O43548 720 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 RP2O75695 350 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 IGF2P01344 180 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 HLA-DQB1P01920 261 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 RPLP2P05387 115 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 PSMB1P20618 241 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 NFYAP23511 347 aaPredicted RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 SORDQ00796 357 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 HSD17B12Q53GQ0 312 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 LRRN1Q6UXK5 716 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 METTL3Q86U44 580 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 SFTPA1Q8IWL2 248 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 CNOT9Q92600 299 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 PAWRQ96IZ0 340 aaKnown RBP10.52□□□□□ -0.73
LDLR-208ENST00000558518 ZNF558Q96NG5 402 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 CAMK1GQ96NX5 476 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 SOSTQ9BQB4 213 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 NOX4Q9NPH5 578 aa10.52□□□□□ -0.73
LDLR-208ENST00000558518 MEIKINA0A087WXM9 373 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 GRXCR1A8MXD5 290 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 HOXD4P09016 255 aaPredicted RBP10.51□□□□□ -0.73
LDLR-208ENST00000558518 MPIP34949 423 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 GBX2P52951 348 aaPredicted RBP10.51□□□□□ -0.73
LDLR-208ENST00000558518 PITPNAQ00169 270 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 LINC00303Q3SY05 128 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 MARC2Q969Z3 335 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 TNFRSF13CQ96RJ3 184 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 CPEB1Q9BZB8 566 aaKnown RBP10.51□□□□□ -0.73
LDLR-208ENST00000558518 TSPAN10Q9H1Z9 355 aaPredicted RBP10.51□□□□□ -0.73
LDLR-208ENST00000558518 CD93Q9NPY3 652 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 LHX9Q9NQ69 397 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 TAS2R3Q9NYW6 316 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 NTMQ9P121 344 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 IKZF2Q9UKS7 526 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 SZT2Q5T011 3432 aa10.51□□□□□ -0.73
LDLR-208ENST00000558518 UBE2QL1A1L167 161 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms