RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PARD6GQ9BYG4 376 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-226ENST00000556825 RASD1Q9Y272 281 aa12.86□□□□□ -0.35
SHMT2-226ENST00000556825 CD8B2A6NJW9 211 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM229AB2RXF0 380 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 M0R143 59 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 CTDSPLO15194 276 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 EFSO43281 561 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 FKTNO75072 461 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 NXPH2O95156 264 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GASTP01350 101 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 SFTPBP07988 381 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 CD8BP10966 210 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GPX2P18283 190 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GALP22466 123 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 TACR3P29371 465 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GDI1P31150 447 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 THBS4P35443 961 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 CRYBA2P53672 197 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF345Q14585 488 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ABRAXAS2Q15018 415 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 NKPD1Q17RQ9 610 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ISXQ2M1V0 245 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 CRB2Q5IJ48 1285 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 NKAIN2Q5VXU1 208 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 C5orf24Q7Z6I8 188 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GTPBP8Q8N3Z3 284 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 AQP11Q8NBQ7 271 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 OR9A1PQ8NGU1 263 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 CMTM7Q96FZ5 175 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 NRSN2Q9GZP1 204 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 MYOZ2Q9NPC6 264 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM100Q9NV29 134 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ST3GAL5Q9UNP4 418 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 WNT10BO00744 389 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 OR2F2O95006 317 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GSTP1P09211 210 aaKnown RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 SPARCP09486 303 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 SFTA3P0C7M3 94 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF865P0CJ78 1059 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 MPZP25189 248 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 OR1E1P30953 314 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 MAS1LP35410 378 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 AKR1C3P42330 323 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 SLC11A2P49281 568 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 DIO1P49895 249 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 BCL2L1Q07817 233 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 OR2F1Q13607 317 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 INSL4Q14641 139 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 TPGS1Q6ZTW0 290 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 WDR53Q7Z5U6 358 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 LDB1Q86U70 411 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 PNLDC1Q8NA58 520 aaKnown RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 HJURPQ8NCD3 748 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 Q8NFD4 153 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 OR4F15Q8NGB8 312 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 OR52B6Q8NGF0 335 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 PAQR8Q8TEZ7 354 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 MVB12AQ96EY5 273 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ADAM19Q9H013 955 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 GSX1Q9H4S2 264 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ZNF408Q9H9D4 720 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 TMEM27Q9HBJ8 222 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 FGF20Q9NP95 211 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-226ENST00000556825 ASIC5Q9NY37 505 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 CAMK2AQ9UQM7 478 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 TIMM10BQ9Y5J6 103 aa12.85□□□□□ -0.35
SHMT2-226ENST00000556825 E7EQ34 232 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 CLIC1O00299 241 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 GOSR2O14653 212 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 RGS14O43566 566 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 FEN1P39748 380 aaKnown RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 MC3RP41968 323 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 LIMS1P48059 325 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 HMGA2P52926 109 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 WDR5P61964 334 aaKnown RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 GOLGA7BQ2TAP0 167 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 DCAF12L2Q5VW00 463 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 FIGNL1Q6PIW4 674 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 CBARPQ8N350 705 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TCEANCQ8N8B7 351 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 OR2AK2Q8NG84 335 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 OR8J2Q8NGG1 315 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 SMIM4Q8WVI0 70 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 KRCC1Q9NPI7 259 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-226ENST00000556825 CALML5Q9NZT1 146 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 DOK5Q9P104 306 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 IL17BQ9UHF5 180 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ASF1AQ9Y294 204 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 GBF1Q92538 1859 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TRAV14DV4A0A0A6YYC5 116 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 TBC1D3BA6NDS4 549 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ARRDC5A6NEK1 342 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 NPIPB8E9PQR5 432 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 OR7A17O14581 309 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 PHOX2AO14813 284 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 EFCAB14O75071 495 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 THEGLP0DJG4 465 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 PRPS2P11908 318 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 OSMP13725 252 aa12.84□□□□□ -0.35
SHMT2-226ENST00000556825 ADRA1AP35348 466 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms