RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CD302Q8IX05 232 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 HDDC3Q8N4P3 179 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 BANPQ8N9N5 519 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 DNAAF3Q8N9W5 541 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 CAMKVQ8NCB2 501 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 RAD54LQ92698 747 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 MSANTD3Q96H12 275 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 SENP8Q96LD8 212 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 TTC25Q96NG3 672 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 DDX50Q9BQ39 737 aaKnown RBP3.65□□□□□ -1.83
PRPF39-209ENST00000556353 SLC39A8Q9C0K1 460 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 HAUS4Q9H6D7 363 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 ZFP14Q9HCL3 533 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 SLC39A1Q9NY26 324 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 THYN1Q9P016 225 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 CD300AQ9UGN4 299 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 EXOC7Q9UPT5 735 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 DYNC1LI1Q9Y6G9 523 aaKnown RBP3.65□□□□□ -1.83
PRPF39-209ENST00000556353 COL6A6A6NMZ7 2263 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 SHROOM3Q8TF72 1996 aa3.65□□□□□ -1.83
PRPF39-209ENST00000556353 CHD5Q8TDI0 1954 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 RP1P56715 2156 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ZSCAN5CA6NGD5 496 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 GPR89AB7ZAQ6 455 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 LMO7DNF2Z398 122 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CASC3O15234 703 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CLDN3O15551 220 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 PRAF2O60831 178 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ATP6V1G1O75348 118 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CRTAPO75718 401 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 NEBLO76041 1014 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 VENTXO95231 258 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 SLU7O95391 586 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 SEMA4FO95754 770 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 PENKP01210 267 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 IGHG1P01857 330 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 GPR89BP0CG08 455 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ERCC2P18074 760 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 GABRR2P28476 465 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 MARCKSP29966 332 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 SSTR1P30872 391 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 MAGEA9P43362 315 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 OR3A3P47888 321 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ARHGDIBP52566 201 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 GMFBP60983 142 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ACTR1AP61163 376 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 NOP14P78316 857 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ARF5P84085 180 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ACTN3Q08043 901 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CAPRIN1Q14444 709 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 LASP1Q14847 261 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 PON2Q15165 354 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF77Q15935 545 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ECSCRQ19T08 205 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 Q3ZCU0 254 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 UTF1Q5T230 341 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 MARC1Q5VT66 337 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TCEAL6Q6IPX3 200 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 GPR141Q7Z602 305 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 SLFN11Q7Z7L1 901 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CROCCP3Q8IVE0 287 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 C10orf53Q8N6V4 93 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 KCTD6Q8NC69 237 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 OR5B17Q8NGF7 314 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 OR1B1Q8NGR6 318 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 DEPDC1BQ8WUY9 529 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 FAM3CQ92520 227 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TCEAL3Q969E4 200 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ALKBH3Q96Q83 286 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TNFRSF13CQ96RJ3 184 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CGREF1Q99674 301 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TSG101Q99816 390 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 BCL7BQ9BQE9 202 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CBWD1Q9BRT8 395 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 KATNB1Q9BVA0 655 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TIPINQ9BVW5 301 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 RAB34Q9BZG1 259 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CCSER1Q9C0I3 900 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 ST6GALNAC4Q9H4F1 302 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 C10orf88Q9H8K7 445 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 LMAN1LQ9HAT1 526 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CUTCQ9NTM9 273 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 SPATA2Q9UM82 520 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 UBQLN1Q9UMX0 589 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 RUVBL2Q9Y230 463 aaKnown RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 CFL2Q9Y281 166 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TIMM22Q9Y584 194 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 LRRK1Q38SD2 2015 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 TEX15Q9BXT5 2789 aa3.64□□□□□ -1.83
PRPF39-209ENST00000556353 COL27A1Q8IZC6 1860 aaPredicted RBP3.64□□□□□ -1.83
PRPF39-209ENST00000556353 USP9XQ93008 2570 aaPredicted RBP3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CCDC162PA2VCL2 907 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 GOLGA8IPA6NC78 632 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 OR6C74A6NCV1 312 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 URADA6NGE7 173 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 GOLGA8JA6NMD2 632 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 UBE2CO00762 179 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CYB561D2O14569 222 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 ZNF263O14978 683 aa3.63□□□□□ -1.83
PRPF39-209ENST00000556353 CHADO15335 359 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms