RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 Q8N377 158 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 SAMD12Q8N8I0 201 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 C4orf32Q8N8J7 132 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 RELL2Q8NC24 303 aaPredicted RBP1.22□□□□□ -2.21
PRPF39-208ENST00000554785 CHDHQ8NE62 594 aaPredicted RBP1.22□□□□□ -2.21
PRPF39-208ENST00000554785 OR4F5Q8NH21 305 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 RDH11Q8TC12 318 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 RASL10AQ92737 203 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 FGF11Q92914 225 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 TMEM186Q96B77 213 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 CEP170P1Q96L14 293 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 NSMCE2Q96MF7 247 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 HSD17B14Q9BPX1 270 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 CCDC28BQ9BUN5 200 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 UBXN6Q9BZV1 441 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 TRIM9Q9C026 710 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 DCTPP1Q9H773 170 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 LY9Q9HBG7 655 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP1.22□□□□□ -2.21
PRPF39-208ENST00000554785 EIF3KQ9UBQ5 218 aaKnown RBP1.22□□□□□ -2.21
PRPF39-208ENST00000554785 TUBGCP4Q9UGJ1 667 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP1.22□□□□□ -2.21
PRPF39-208ENST00000554785 SPATA2Q9UM82 520 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 CPQQ9Y646 472 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 FN1P02751 2386 aaKnown RBP1.22□□□□□ -2.21
PRPF39-208ENST00000554785 ZGRF1Q86YA3 2104 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 AGRNO00468 2067 aa1.22□□□□□ -2.21
PRPF39-208ENST00000554785 FER1L5A0AVI2 2057 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 UBE4BO95155 1302 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 A0A0U1RRA0 63 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 RNF103-CHMP3A0A140T963 221 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TEX48A0A1B0GUV7 120 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 A0A1W2PPR1 153 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TMEM89A2RUT3 159 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 KRT87PA6NCN2 255 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CFAP73A6NFT4 308 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 RPL37AP8A6NKH3 93 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 RNF212BA8MTL3 300 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SH2D1BO14796 132 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ARPC1BO15143 372 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TXNL1O43396 289 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HCRTO43612 131 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HMMRO75330 724 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 STAM2O75886 525 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IGHV3-13P01766 116 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ETS1P14921 441 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GNSP15586 552 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GAP43P17677 238 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GABRG2P18507 467 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ATF6P18850 670 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MX1P20591 662 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SHC1P29353 583 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SPRP35270 261 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 IFNAR2P48551 515 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GSK3BP49841 420 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CCL11P51671 97 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ACY1Q03154 408 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 KLF5Q13887 457 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GAMTQ14353 236 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CLPPQ16740 277 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HAGHQ16775 308 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 HKDC1Q2TB90 917 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 UNC50Q53HI1 259 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 C9orf66Q5T8R8 295 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 EMBQ6PCB8 327 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CNSTQ6PJW8 725 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF841Q6ZN19 808 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TPGS1Q6ZTW0 290 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 C1orf186Q6ZWK4 172 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TMUB2Q71RG4 321 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TIPARPQ7Z3E1 657 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 YRDCQ86U90 279 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 GTSCR1Q86UQ5 136 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SLC22A16Q86VW1 577 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF619Q8N2I2 560 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 EID2Q8N6I1 236 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 LRRC17Q8N6Y2 441 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 C17orf47Q8NEP4 570 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ZNF461Q8TAF7 563 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TMEM37Q8WXS4 190 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 P3H4Q92791 437 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TMEM45BQ96B21 275 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 C18orf25Q96B23 403 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 MED8Q96G25 268 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CNOT6LQ96LI5 555 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 PSMB7Q99436 277 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SOSTQ9BQB4 213 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 CBWD1Q9BRT8 395 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 TMEM175Q9BSA9 504 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 RBM24Q9BX46 236 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 NACA2Q9H009 215 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 SIRPDQ9H106 197 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 LINC00597Q9H2U6 94 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 C8orf33Q9H7E9 229 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ECT2Q9H8V3 914 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 Q9HAA7 133 aa1.21□□□□□ -2.22
PRPF39-208ENST00000554785 ELL3Q9HB65 397 aaPredicted RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 DUS2Q9NX74 493 aaKnown RBP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.21□□□□□ -2.22
PRPF39-208ENST00000554785 WRAP73Q9P2S5 460 aaPredicted RBP1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms