RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 A0A1B0GWA3 101 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ELOA3DA6NLF2 546 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 LINC01387J3KSC0 135 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 TNFRSF11BO00300 401 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 OIP5O43482 229 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 PRG2P13727 222 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 MEOX1P50221 254 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 PLGLB1Q02325 96 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SLC34A1Q06495 639 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 HYAL4Q2M3T9 481 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 PLPPR5Q32ZL2 321 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ELOA3BQ3SY89 546 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SLC25A53Q5H9E4 307 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 HIPK1Q86Z02 1210 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 RBM45Q8IUH3 476 aaKnown RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ZDHHC13Q8IUH4 622 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SULF2Q8IWU5 870 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 WDSUB1Q8N9V3 476 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ZFP62Q8NB50 900 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ELOA3Q8NG57 546 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 GPR119Q8TDV5 335 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SLC25A43Q8WUT9 341 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 DNAJC9Q8WXX5 260 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 C9orf16Q9BUW7 83 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SLC19A3Q9BZV2 496 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 PRORYQ9H606 182 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ZNF703Q9H7S9 590 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 NMNAT1Q9HAN9 279 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SERINC1Q9NRX5 453 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 MED17Q9NVC6 651 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 TUBA8Q9NY65 449 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-210ENST00000553950 MED11Q9P086 117 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 ZMIZ1Q9ULJ6 1067 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 SLC7A7Q9UM01 511 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 LYVE1Q9Y5Y7 322 aa13.19□□□□□ -0.3
SHMT2-210ENST00000553950 LRRC3CA6NJW4 275 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 G3V3Y1 287 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 J3KTA2 159 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 DIRAS1O95057 198 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 ZNF23P17027 643 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 PRKCAP17252 672 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 DPP4P27487 766 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 GDF1P27539 372 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 APOBEC1P41238 236 aaKnown RBP13.18□□□□□ -0.3
SHMT2-210ENST00000553950 GPR85P60893 370 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 HOXC5Q00444 222 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 SELENBP1Q13228 472 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 PIN1Q13526 163 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-210ENST00000553950 DCST1Q5T197 706 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 RPUSD3Q6P087 351 aaKnown RBP13.18□□□□□ -0.3
SHMT2-210ENST00000553950 C3orf33Q6P1S2 294 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 SHQ1Q6PI26 577 aaKnown RBP13.18□□□□□ -0.3
SHMT2-210ENST00000553950 Q6ZS92 163 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 RRM2BQ7LG56 351 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 GDF7Q7Z4P5 450 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 OR5K1Q8NHB7 308 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 ACOT11Q8WXI4 607 aaPredicted RBP13.18□□□□□ -0.3
SHMT2-210ENST00000553950 C3orf49Q96BT1 292 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 ABHD17AQ96GS6 310 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 PKP2Q99959 881 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 PSD2Q9BQI7 771 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 PIGQQ9BRB3 760 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 TTTY12Q9BZ98 90 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 OR2B2Q9GZK3 357 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 DEPPQ9NTK1 212 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 FBXL2Q9UKC9 423 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 VDAC3Q9Y277 283 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 B3GNT3Q9Y2A9 372 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 TMEM5Q9Y2B1 443 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 TP53TG5Q9Y2B4 290 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 PCNX3Q9H6A9 2034 aa13.18□□□□□ -0.3
SHMT2-210ENST00000553950 A0A0G2JMM0 328 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 A0A1W2PPB8 328 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 A0A1W2PRS3 328 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 C2orf72A6NCS6 295 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 KIR3DP1A8MWS1 328 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 FFAR1O14842 300 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 CASQ2O14958 399 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 TPST2O60704 377 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 ADAM11O75078 769 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 CCNB2O95067 398 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 IGF2P01344 180 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 HK1P19367 917 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 CXCR1P25024 350 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 YAP1P46937 504 aaKnown RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 ST13P50502 369 aaKnown RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 HMGA2P52926 109 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 SESN3P58005 492 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 FOXO1Q12778 655 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 MERTKQ12866 999 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 TOMM20Q15388 145 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 TRIP10Q15642 601 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 OR5M10Q6IEU7 315 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 ASB18Q6ZVZ8 466 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 TSEN54Q7Z6J9 526 aaKnown RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 ATG4DQ86TL0 474 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 RNF113BQ8IZP6 322 aaKnown RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 GTPBP8Q8N3Z3 284 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-210ENST00000553950 FAM109AQ8N4B1 249 aa13.17□□□□□ -0.3
SHMT2-210ENST00000553950 RNF217Q8TC41 542 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms