RNA–Protein interactions for RNA: ENST00000543324.1

CIT-213, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 3

Gene CIT, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-213	ENST00000543324	CD163	Q86VB7	1156 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	SLC22A16	Q86VW1	577 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	DND1	Q8IYX4	353 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	OFCC1	Q8IZS5	231 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	C8orf59	Q8N0T1	100 aa	Predicted RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	LRRC25	Q8N386	305 aa	Predicted RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	FAM109A	Q8N4B1	249 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	SVOP	Q8N4V2	548 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	TMEM156	Q8N614	296 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	TMEM251	Q8N6I4	163 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	ZNF615	Q8N8J6	731 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	C17orf47	Q8NEP4	570 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	RHOXF1	Q8NHV9	184 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	ZFP90	Q8TF47	636 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	ASB15	Q8WXK1	588 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	POP5	Q969H6	163 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	REPS1	Q96D71	796 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	SPACA9	Q96E40	222 aa	Predicted RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	L3HYPDH	Q96EM0	354 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	C11orf24	Q96F05	449 aa	Predicted RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	MARK4	Q96L34	752 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	NSUN5	Q96P11	429 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	FAM173A	Q9BQD7	235 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	PELO	Q9BRX2	385 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	OR8D2	Q9GZM6	311 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	WWTR1	Q9GZV5	400 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	ESRP2	Q9H6T0	727 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	IPPK	Q9H8X2	491 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	IL1RL2	Q9HB29	575 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	NEK6	Q9HC98	313 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	SACM1L	Q9NTJ5	587 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	LYAR	Q9NX58	379 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	CMTM6	Q9NX76	183 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	TEX10	Q9NXF1	929 aa	Predicted RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	CCDC167	Q9P0B6	97 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	XPR1	Q9UBH6	696 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	ADAM29	Q9UKF5	820 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	CES1P1	Q9UKY3	287 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	BAG5	Q9UL15	447 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	TNPO3	Q9Y5L0	923 aa	Known RBP	5.84	□□□□□ -1.47
CIT-213	ENST00000543324	SNX5	Q9Y5X3	404 aa		5.84	□□□□□ -1.47
CIT-213	ENST00000543324	CLDN24	A6NM45	220 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	OR6C76	A6NM76	312 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324		A8MT66	165 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	NOTO	A8MTQ0	251 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	UPK1A	O00322	258 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	TRIM3	O75382	744 aa	Predicted RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SNX4	O95219	450 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	GOSR1	O95249	250 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	KCNH1	O95259	989 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	CLDN9	O95484	217 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SNAP29	O95721	258 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	IFNA16	P05015	189 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	ATP1B1	P05026	303 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	ALPL	P05186	524 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	FGF4	P08620	206 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	HTR1A	P08908	422 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	CELA3A	P09093	270 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	RBP1	P09455	135 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	CT62	P0C5K7	136 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SLC35E2	P0CK97	266 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	TRAPPC2	P0DI81	140 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	TRAPPC2B	P0DI82	140 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	ARAF	P10398	606 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	COX7A2	P14406	83 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	M6PR	P20645	277 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	EEF1B2	P24534	225 aa	Known RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	RYK	P34925	604 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	RCVRN	P35243	200 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	BUD31	P41223	144 aa	Predicted RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	MAGEA5	P43359	124 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	GP2	P55259	537 aa	Known RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	CXCR4	P61073	352 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	PPIA	P62937	165 aa	Known RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	MGAT2	Q10469	447 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	STX4	Q12846	297 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	DUSP8	Q13202	625 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	CPSF6	Q16630	551 aa	Known RBP eCLIP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	DPY19L1	Q2PZI1	675 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	ZNF750	Q32MQ0	723 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	RFX4	Q33E94	735 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SMUG1	Q53HV7	270 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	VAX1	Q5SQQ9	334 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SYT6	Q5T7P8	510 aa	Predicted RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	FAM219B	Q5XKK7	198 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	FRG2	Q64ET8	278 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SIGIRR	Q6IA17	410 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	LETMD1	Q6P1Q0	360 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	IL20RB	Q6UXL0	311 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	R3HCC1L	Q7Z5L2	792 aa	Known RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	RETREG3	Q86VR2	466 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	NUDT13	Q86X67	352 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	LYSMD2	Q8IV50	215 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	OR4N5	Q8IXE1	308 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	METTL4	Q8N3J2	472 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	SVOPL	Q8N434	492 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	PTGR2	Q8N8N7	351 aa	Predicted RBP	5.83	□□□□□ -1.48
CIT-213	ENST00000543324	BPIFB6	Q8NFQ5	453 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	OR7A2P	Q8NGA2	310 aa		5.83	□□□□□ -1.48
CIT-213	ENST00000543324	OR52E4	Q8NGH9	312 aa		5.83	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms