RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PRKD3O94806 890 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 EDN3P14138 238 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 PLA2G2AP14555 144 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 TNFRSF1BP20333 461 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 TCEA1P23193 301 aaKnown RBP15.5■□□□□ 0.07
LIG1-204ENST00000542460 CHMP24386 653 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 SLC1A3P43003 542 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 HTR3AP46098 478 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 OR1E2P47887 323 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 GFRA1P56159 465 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 DLX5P56178 289 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 B3GALT5-AS1P59052 145 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 FOXK1P85037 733 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 FLOT2Q14254 428 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 IFI44LQ53G44 452 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 WBP2NLQ6ICG8 309 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 ARHGAP11AQ6P4F7 1023 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 AAGABQ6PD74 315 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 CARM1Q86X55 608 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 LACC1Q8IV20 430 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 LSMEM1Q8N8F7 131 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 OR4D11Q8NGI4 311 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 GEMIN6Q8WXD5 167 aaKnown RBP15.5■□□□□ 0.07
LIG1-204ENST00000542460 PYURFQ96I23 114 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 SFXN2Q96NB2 322 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 TRIM2Q9C040 744 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 SLC6A5Q9Y345 797 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 ZNF462Q96JM2 2506 aa15.5■□□□□ 0.07
LIG1-204ENST00000542460 PRRC2CQ9Y520 2896 aaKnown RBP15.49■□□□□ 0.07
LIG1-204ENST00000542460 OR2M5A3KFT3 312 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 AQP7O14520 342 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 TPST2O60704 377 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 NTN1O95631 604 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 APOBEC1P41238 236 aaKnown RBP15.49■□□□□ 0.07
LIG1-204ENST00000542460 KCNC4Q03721 635 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 FOXF1Q12946 379 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 NPTX1Q15818 432 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 NHSL2Q5HYW2 709 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 GRINAQ7Z429 371 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 RBM45Q8IUH3 476 aaKnown RBP15.49■□□□□ 0.07
LIG1-204ENST00000542460 CADM2Q8N3J6 435 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 OR5M1Q8NGP8 315 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 POC1BQ8TC44 478 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 MCHR1Q99705 422 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 TMEM27Q9HBJ8 222 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 RPS6KB2Q9UBS0 482 aa15.49■□□□□ 0.07
LIG1-204ENST00000542460 A0A1B0GTH9 108 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 SHISA8B8ZZ34 492 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ACTL6AO96019 429 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 IFNW1P05000 195 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 PSMA4P25789 261 aaKnown RBP15.48■□□□□ 0.07
LIG1-204ENST00000542460 HSF1Q00613 529 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 MERTKQ12866 999 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ENPP6Q6UWR7 440 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 FAM86B1Q8N7N1 296 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ABTB1Q969K4 478 aaPredicted RBP15.48■□□□□ 0.07
LIG1-204ENST00000542460 UTP4Q969X6 686 aaKnown RBP15.48■□□□□ 0.07
LIG1-204ENST00000542460 NPAS1Q99742 590 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 PRR14Q9BWN1 585 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ADAM19Q9H013 955 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ZNF337Q9Y3M9 751 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 TCRBV5S2A0A599 114 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 OR14I1A6ND48 311 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 AQP12BA6NM10 295 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 BMP7P18075 431 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 HTR2AP28223 471 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ELK4P28324 431 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 TACR3P29371 465 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 OR1Q1Q15612 314 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 VASNQ6EMK4 673 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 GFRALQ6UXV0 394 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 PLEKHM3Q6ZWE6 761 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 PRICKLE2Q7Z3G6 844 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 AQP12AQ8IXF9 295 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 ST6GALNAC3Q8NDV1 305 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 SARAFQ96BY9 339 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 UGT2B28Q9BY64 529 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 POLR2J2Q9GZM3 115 aaKnown RBP15.48■□□□□ 0.07
LIG1-204ENST00000542460 POLR2J3Q9H1A7 115 aaKnown RBP15.48■□□□□ 0.07
LIG1-204ENST00000542460 SERINC1Q9NRX5 453 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 SPRR3Q9UBC9 169 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 STOML1Q9UBI4 398 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 V9GYQ6 96 aa15.48■□□□□ 0.07
LIG1-204ENST00000542460 HELZ2Q9BYK8 2649 aaKnown RBP15.47■□□□□ 0.07
LIG1-204ENST00000542460 CIB2O75838 187 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 WISP1O95388 367 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 POLR2HP52434 150 aaKnown RBP15.47■□□□□ 0.07
LIG1-204ENST00000542460 TLE1Q04724 770 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 ENTPD8Q5MY95 495 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 C1orf146Q5VVC0 180 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 ZNF613Q6PF04 617 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 ULK3Q6PHR2 472 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 DEF8Q6ZN54 512 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 PHF10Q8WUB8 498 aaKnown RBP15.47■□□□□ 0.07
LIG1-204ENST00000542460 DNAJA4Q8WW22 397 aaPredicted RBP15.47■□□□□ 0.07
LIG1-204ENST00000542460 C3orf49Q96BT1 292 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 TIMP4Q99727 224 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 AMBRA1Q9C0C7 1298 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 CTPS2Q9NRF8 586 aa15.47■□□□□ 0.07
LIG1-204ENST00000542460 OSGIN1Q9UJX0 560 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms