RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 A6NNC1 897 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ZBTB42B2RXF5 422 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 MATN3O15232 486 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SOCS5O75159 536 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 CA11O75493 328 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ETFAP13804 333 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 PSMB1P20618 241 aaKnown RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 CST5P28325 142 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 CHI3L1P36222 383 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 ARL4AP40617 200 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SLC11A2P49281 568 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 HTR6P50406 440 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 TDGF1P3P51864 188 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 GMFBP60983 142 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 KIAA0141Q14154 515 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 ARHGAP19Q14CB8 494 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ODF4Q2M2E3 257 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 XKR4Q5GH76 650 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 GDF6Q6KF10 455 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 FIGNL1Q6PIW4 674 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 CXCL17Q6UXB2 119 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 VRK3Q8IV63 474 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SLC24A4Q8NFF2 622 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 NPRL2Q8WTW4 380 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 KHSRPQ92945 711 aaKnown RBP eCLIP8.8□□□□□ -1
CLIP1-214ENST00000540539 ARL11Q969Q4 196 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 RGMAQ96B86 450 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 LINGO1Q96FE5 620 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 OR52E6Q96RD3 313 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ATOH8Q96SQ7 321 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 TSSK6Q9BXA6 273 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ACPTQ9BZG2 426 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 RNF208Q9H0X6 261 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 NLE1Q9NVX2 485 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 H2AFY2Q9P0M6 372 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 FAM96BQ9Y3D0 163 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 CCDC187A0A096LP49 1063 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 B4GALT3O60512 393 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 CCL5P13501 91 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 TACR3P29371 465 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 FEN1P39748 380 aaKnown RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 ADH7P40394 386 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 MAGEB1P43366 347 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 PSEN2P49810 448 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 DLX5P56178 289 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 WNT3P56703 355 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 WNT4P56705 351 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SORDQ00796 357 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 BCL2L1Q07817 233 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SURF1Q15526 300 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ELAVL1Q15717 326 aaKnown RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 ISXQ2M1V0 245 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 HYAL4Q2M3T9 481 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 C14orf28Q4W4Y0 310 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 DCAF10Q5QP82 559 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 DCAF12L2Q5VW00 463 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ZNF813Q6ZN06 617 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ANGPTL5Q86XS5 388 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 KRTCAP2Q8N6L1 136 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ARIH2OSQ8N7S6 290 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 OR4C15Q8NGM1 316 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SMAP2Q8WU79 429 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 THEM6Q8WUY1 208 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 TRAPPC12Q8WVT3 735 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 CMTM7Q96FZ5 175 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 NOL4LQ96MY1 436 aaPredicted RBP8.8□□□□□ -1
CLIP1-214ENST00000540539 DEFB118Q96PH6 123 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SLC6A16Q9GZN6 736 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SEC61A2Q9H9S3 476 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 FKRPQ9H9S5 495 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 ASF1AQ9Y294 204 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 SHROOM3Q8TF72 1996 aa8.8□□□□□ -1
CLIP1-214ENST00000540539 B3GALT4O96024 378 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 ZNF888P0CJ79 500 aaPredicted RBP8.79□□□□□ -1
CLIP1-214ENST00000540539 BMP7P18075 431 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 PPP2R1BP30154 601 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 CDKN1BP46527 198 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 NDUFA6P56556 154 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 MAXP61244 160 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 SKP1P63208 163 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 SLC9A5Q14940 896 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 ZNF699Q32M78 642 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 KHDC3LQ587J8 217 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 OGFOD3Q6PK18 319 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 VHLLQ6RSH7 139 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 CILP2Q8IUL8 1156 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 OR6V1Q8N148 313 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 STK40Q8N2I9 435 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 C16orf78Q8WTQ4 265 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 HMGB4Q8WW32 186 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 GAL3ST3Q96A11 431 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 PHYHIPLQ96FC7 376 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 ZFP3Q96NJ6 502 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 TMED9Q9BVK6 235 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 WDCPQ9H6R7 721 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 CBLCQ9ULV8 474 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 TNFSF13BQ9Y275 285 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 SLC27A6Q9Y2P4 619 aa8.79□□□□□ -1
CLIP1-214ENST00000540539 RPL36Q9Y3U8 105 aaKnown RBP8.79□□□□□ -1
CLIP1-214ENST00000540539 GBF1Q92538 1859 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms