RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PCGF2P35227 344 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 RPL3P39023 403 aaKnown RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 XCR1P46094 333 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 SLC11A2P49281 568 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 MTNR1BP49286 362 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 HCCSP53701 268 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 H2BFSP57053 126 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 MAXP61244 160 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ACVR1Q04771 509 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ILF3Q12906 894 aaKnown RBP eCLIP8.81□□□□□ -1
CTNNA1-243ENST00000540387 IHHQ14623 411 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 SSPNQ14714 243 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 PPA1Q15181 289 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ARSIQ5FYB1 569 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 SIRPB2Q5JXA9 342 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ZNF626Q68DY1 528 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 TMEM184AQ6ZMB5 413 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 OR2W3Q7Z3T1 314 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 CLECL1Q8IZS7 167 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 OR6V1Q8N148 313 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 CFAP52Q8N1V2 620 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 IQCF1Q8N6M8 205 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ZNF582Q96NG8 517 aaPredicted RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 NAA11Q9BSU3 229 aaPredicted RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 SLC25A51Q9H1U9 297 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 CHST8Q9H2A9 424 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 PRDM13Q9H4Q3 707 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ASF1BQ9NVP2 202 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 TMEM238LA0A1B0GVL6 79 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 LRRN3E7EW58 273 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 MANBAO00462 879 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ZNF197O14709 1029 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 PCDH7O60245 1069 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 SLC25A12O75746 678 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 RPP40O75818 363 aaKnown RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 UBL3O95164 117 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 FGF19O95750 216 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ATXN1LP0C7T5 689 aaKnown RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 LIMS3P0CW19 117 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 LIMS4P0CW20 117 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 RPA2P15927 270 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ZNF14P17017 642 aaPredicted RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 RCC1P18754 421 aaPredicted RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 SDC1P18827 310 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 TACR2P21452 398 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 IGFBP4P22692 258 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 PNLIPRP2P54317 469 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 IL2P60568 153 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 SRSF3P84103 164 aaKnown RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 CLINT1Q14677 625 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ATXN7L2Q5T6C5 722 aaPredicted RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 OR52W1Q6IF63 320 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 TMEM71Q6P5X7 295 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 FAM26EQ8N5C1 309 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 KDF1Q8NAX2 398 aaPredicted RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 ZNF511Q8NB15 262 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ZNF485Q8NCK3 441 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 C11orf65Q8NCR3 313 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 OR5M1Q8NGP8 315 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 OR5J2Q8NH18 312 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 HIST1H2BAQ96A08 127 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 KCTD12Q96CX2 325 aaKnown RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 C14orf79Q96F83 325 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 RBM18Q96H35 190 aaKnown RBP8.81□□□□□ -1
CTNNA1-243ENST00000540387 GINS4Q9BRT9 223 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 DUSP26Q9BV47 211 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 LRRN3Q9H3W5 708 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 MTCH2Q9Y6C9 303 aa8.81□□□□□ -1
CTNNA1-243ENST00000540387 ANAPC1Q9H1A4 1944 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 IGLV3-10A0A075B6K4 115 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 A0A0A6YYC8 382 aaPredicted RBP8.8□□□□□ -1
CTNNA1-243ENST00000540387 A0A1W2PPC1 479 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 ARRDC5A6NEK1 342 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 I3L1I5 382 aaPredicted RBP8.8□□□□□ -1
CTNNA1-243ENST00000540387 LEFTY2O00292 366 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 SMAD6O43541 496 aaKnown RBP8.8□□□□□ -1
CTNNA1-243ENST00000540387 TSPAN3O60637 253 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 PRAMEF12O95522 483 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 ACTL6AO96019 429 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 POU2F2P09086 479 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 HTR2AP28223 471 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 GDNFP39905 211 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 GMFBP60983 142 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 RPS24P62847 133 aaKnown RBP8.8□□□□□ -1
CTNNA1-243ENST00000540387 ITKQ08881 620 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 GINS1Q14691 196 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 PTPRNQ16849 979 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 C2orf68Q2NKX9 166 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 ADGRF1Q5T601 910 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 MSANTD1Q6ZTZ1 278 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 SSX6Q7RTT6 188 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 PRSS45Q7RTY3 260 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 LHFPL3Q86UP9 236 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 FAM98AQ8NCA5 519 aaKnown RBP8.8□□□□□ -1
CTNNA1-243ENST00000540387 THEM6Q8WUY1 208 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 HMGB4Q8WW32 186 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 IMP4Q96G21 291 aaKnown RBP8.8□□□□□ -1
CTNNA1-243ENST00000540387 ACPTQ9BZG2 426 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 AUNIPQ9H7T9 357 aa8.8□□□□□ -1
CTNNA1-243ENST00000540387 FGF20Q9NP95 211 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms