RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 COPZ1P61923 177 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RIPK1Q13546 671 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 QPRTQ15274 297 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ATP6AP1Q15904 470 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 Q6ZS92 163 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 CYP4Z1Q86W10 505 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 C9orf43Q8TAL5 461 aaPredicted RBP17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 C1GALT1C1Q96EU7 318 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PTGES2Q9H7Z7 377 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DCLRE1BQ9H816 532 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NMNAT1Q9HAN9 279 aaPredicted RBP17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TAS2R10Q9NYW0 307 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DNAJB9Q9UBS3 223 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RIMS3Q9UJD0 308 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TUBD1Q9UJT1 453 aa17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 BOKQ9UMX3 212 aaPredicted RBP17.18■□□□□ 0.34
TNFRSF1A-213ENST00000540022 A0A0B4J2E0 115 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 A0A1B0GX12 115 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DEAF1O75398 565 aaPredicted RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 OR5F1O95221 314 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 WISP1O95388 367 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 BAG2O95816 211 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 LDLRP01130 860 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 UQCRBP14927 111 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ANPEPP15144 967 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RRM2P31350 389 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RFC3P40938 356 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SESN3P58005 492 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SPIBQ01892 262 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 FOXD4Q12950 439 aaPredicted RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PPP1R8Q12972 351 aaKnown RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 COLEC12Q5KU26 742 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 WBP2NLQ6ICG8 309 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ZNF613Q6PF04 617 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ASB18Q6ZVZ8 466 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 OFCC1Q8IZS5 231 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PQLC1Q8N2U9 271 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ZFP62Q8NB50 900 aaPredicted RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PIK3C3Q8NEB9 887 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SLC41A3Q96GZ6 507 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DHRS1Q96LJ7 313 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NPAS1Q99742 590 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 FNDC11Q9BVV2 318 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 MFRPQ9BY79 579 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 POLR2J2Q9GZM3 115 aaKnown RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 POLR2J3Q9H1A7 115 aaKnown RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NTN4Q9HB63 628 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 MED17Q9NVC6 651 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NKX1-2Q9UD57 310 aaPredicted RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 VDAC3Q9Y277 283 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 C15orf41Q9Y2V0 281 aa17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SPENQ96T58 3664 aaKnown RBP17.17■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TRAPPC13A5PLN9 417 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 LYPD3O95274 346 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ZNF169Q14929 603 aaPredicted RBP17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 GDF7Q7Z4P5 450 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 C3orf49Q96BT1 292 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TTTY12Q9BZ98 90 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SEMA6AQ9H2E6 1030 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 UBQLN3Q9H347 655 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RNPEPL1Q9HAU8 725 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 MAN2C1Q9NTJ4 1040 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ACER3Q9NUN7 267 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SLC7A7Q9UM01 511 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 GNGT2O14610 69 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ADAMDEC1O15204 470 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DPM1O60762 260 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ATP6V1G2O95670 118 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 H1F0P07305 194 aaKnown RBP17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PRKCAP17252 672 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DPP4P27487 766 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 SLC1A3P43003 542 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ZNF41P51814 821 aaPredicted RBP17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 IST1P53990 364 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 CDH12P55289 794 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 DSCR4P56555 118 aaPredicted RBP17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ST3GAL3Q11203 375 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PLPPR5Q32ZL2 321 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ULK3Q6PHR2 472 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 OR52J3Q8NH60 311 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ST8SIA1Q92185 356 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NR4A3Q92570 626 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 ADAM19Q9H013 955 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 STX18Q9P2W9 335 aaKnown RBP17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 RPS6KB2Q9UBS0 482 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 LYVE1Q9Y5Y7 322 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 U3KQV3 271 aa17.16■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NBASA2RRP1 2371 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 GLSO94925 669 aaPredicted RBP17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 GADD45GO95257 159 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 NTN1O95631 604 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 GP1BBP13224 206 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TCEA1P23193 301 aaKnown RBP17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 TACR3P29371 465 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 IFNA8P32881 189 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 FOXK1P85037 733 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PMP22Q01453 160 aa17.15■□□□□ 0.34
TNFRSF1A-213ENST00000540022 PLGLB1Q02325 96 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms